Factsheet for VIT_09s0002g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01500.t01	Wine grape	nucleus	90.42	93.65
VIT_04s0008g01670.t01	Wine grape	nucleus	92.34	91.29
Zm00001d049007_P001	Maize	cytosol	39.85	88.14
Solyc05g032770.2.1	Tomato	nucleus	57.09	86.63
KRH06119	Soybean	nucleus	83.52	86.17
Solyc07g041190.2.1	Tomato	nucleus	80.84	85.77
KRH47546	Soybean	nucleus	83.14	85.77
PGSC0003DMT400054001	Potato	nucleus	80.84	85.43
KRH23260	Soybean	nucleus	78.16	82.93
KRH10063	Soybean	nucleus	78.54	82.66
VIT_11s0016g01630.t01	Wine grape	plastid	31.8	82.18
VIT_12s0035g01980.t01	Wine grape	nucleus	72.8	75.1
VIT_08s0105g00360.t01	Wine grape	nucleus	65.9	70.78
VIT_13s0067g01000.t01	Wine grape	nucleus	61.3	66.39
Zm00001d049006_P001	Maize	plastid	32.18	64.12
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	27.97	33.33
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	27.97	33.33

Protein Annotations

EntrezGene:100263503	wikigene:100263503	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:AM432216	InterPro:Alfin
ProteinID:CAN73679	ProteinID:CAN73679.1	ProteinID:CBI35899	ProteinID:CBI35899.3	UniProt:D7TZV3	EMBL:FN596494
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	EntrezGene:LOC100263503	wikigene:LOC100263503	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903	TIGR:TC68129
UniParc:UPI0001983DCF	ArrayExpress:VIT_09s0002g01600	EnsemblPlantsGene:VIT_09s0002g01600	EnsemblPlants:VIT_09s0002g01600.t01	unigene:Vvi.16513	RefSeq:XP_002276358
RefSeq:XP_002276358.1	RefSeq:XP_002276418	RefSeq:XP_002276418.2	RefSeq:XP_003632813	RefSeq:XP_003632813.1	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:1392383..1397840

Molecular Weight (calculated)

29662.6 Da

IEP (calculated)

4.919

GRAVY (calculated)

-0.803

Length

261 amino acids

Sequence
(BLAST)

001: MDGGANYNPR TVEEVFRDFK GRRAGMIKAL TTDVDEFYQQ CDPEKENLCL YGFPNELWEV NLPAEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDA
101: WLLAVAFYFG ARFGFDKADR KRLFNMINDL PTIFEVVTGT AKKQVKEKSS VSNHSSNKSK SNSKVVPQQQ QPQQRGSESQ GKYSKTPQKD EDEGLEEEEE
201: DEHGETLCGA CGENYASDEF WICCDICEKW FHGKCVKITP ARAEHIKQYK CPSCSNKRSR P

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.