Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 42.75 | 57.73 |
| Zm00001d041767_P002 | Maize | nucleus | 70.99 | 35.09 |
| Zm00001d038208_P001 | Maize | nucleus | 67.18 | 34.38 |
| KRH23260 | Soybean | nucleus | 62.6 | 33.33 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 64.89 | 33.07 |
| VIT_04s0008g01670.t01 | Wine grape | nucleus | 66.41 | 32.95 |
| KRH05401 | Soybean | endoplasmic reticulum, nucleus, plastid | 61.83 | 32.66 |
| KRH06119 | Soybean | nucleus | 62.6 | 32.41 |
| VIT_09s0002g01600.t01 | Wine grape | nucleus | 64.12 | 32.18 |
| KRH15616 | Soybean | nucleus | 62.6 | 32.03 |
| Zm00001d023962_P001 | Maize | nucleus | 74.81 | 31.82 |
| KRH10063 | Soybean | nucleus | 59.54 | 31.45 |
| KRH47546 | Soybean | nucleus | 58.78 | 30.43 |
| PGSC0003DMT400054001 | Potato | nucleus | 57.25 | 30.36 |
| Zm00001d012196_P005 | Maize | nucleus | 64.12 | 29.27 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 59.54 | 27.66 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 59.54 | 27.18 |
| Zm00001d010834_P001 | Maize | nucleus | 45.8 | 23.72 |
| Zm00001d005185_P001 | Maize | nucleus | 42.75 | 23.24 |
| Zm00001d037537_P001 | Maize | nucleus | 45.04 | 22.87 |
| Zm00001d025504_P001 | Maize | nucleus | 39.69 | 20.97 |
| Zm00001d022110_P002 | Maize | nucleus | 50.38 | 20.95 |
| Zm00001d034627_P002 | Maize | nucleus | 39.69 | 20.8 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.48 | 16.44 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.48 | 16.44 |
| Zm00001d010241_P002 | Maize | cytosol | 19.85 | 16.05 |
| Zm00001d025491_P002 | Maize | nucleus | 42.75 | 15.38 |
| Zm00001d036294_P001 | Maize | plastid | 3.05 | 3.1 |
| Zm00001d049007_P001 | Maize | cytosol | 0.76 | 0.85 |
| Zm00001d028496_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d009466_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d044178_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A1D6PRK8 | ProteinID:AQK49352.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0008443641 | InterPro:Zinc_finger_PHD-type_CS |
| EnsemblPlantsGene:Zm00001d049006 | EnsemblPlants:Zm00001d049006_P001 | EnsemblPlants:Zm00001d049006_T001 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
PHD finger protein ALFIN-LIKE 6
Coordinates
chr4:-:12307519..12308406
Molecular Weight (calculated)
14471.7 Da
IEP (calculated)
6.496
GRAVY (calculated)
-1.247
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MINNLPTIYE VVTGTAKKQT KEKTPKSSSK SNKAGPKPPR QPEPNSRGSK MPPPKDEDDS GGEEEEEEED HENTLCGSCG DNYGQDEFWI CCDACETWFH
101: GKCVKITPAK AEHIKHYKCP NCSGSGKRAR A
101: GKCVKITPAK AEHIKHYKCP NCSGSGKRAR A
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.