Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049006_P001 | Maize | plastid | 57.73 | 42.75 |
| Solyc07g041190.2.1 | Tomato | nucleus | 73.2 | 28.86 |
| Solyc06g062850.2.1 | Tomato | nucleus | 71.13 | 26.85 |
| Solyc12g096040.1.1 | Tomato | nucleus | 68.04 | 25.98 |
| Solyc01g102760.2.1 | Tomato | nucleus | 65.98 | 25.81 |
| Solyc01g102750.2.1 | Tomato | nucleus | 65.98 | 25.7 |
| Solyc10g076690.1.1 | Tomato | nucleus | 60.82 | 24.58 |
| Solyc09g005360.2.1 | Tomato | nucleus | 56.7 | 22.82 |
| Solyc10g085180.1.1 | Tomato | nucleus | 54.64 | 22.08 |
| Solyc06g051420.2.1 | Tomato | nucleus | 50.52 | 20.0 |
| Solyc03g121930.2.1 | Tomato | nucleus | 56.7 | 19.93 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 30.93 | 13.7 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 30.93 | 13.7 |
| Solyc05g032770.2.1 | Tomato | nucleus | 8.25 | 4.65 |
| Zm00001d049007_P001 | Maize | cytosol | 3.09 | 2.54 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:K4C057 | PFAM:PF00628 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc05g032760.2 | EnsemblPlants:Solyc05g032760.2.1 | UniParc:UPI00027660C1 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
No Description!
Coordinates
chr5:+:45078236..45084278
Molecular Weight (calculated)
11097.0 Da
IEP (calculated)
4.935
GRAVY (calculated)
-0.664
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MARQAQIVFF SIFKLSSGKY AKVEVKDEED GLDEEEEEHG DTLCGACGEN YASDEFWICC DLCERWFHGN CVKITPAKAE HIKQYKCPSC SNKRPRP
001: MCFEKQNLCL YGFPNEVWEV NLPAEEVPPE LPEPALGINF ARDGMQERNW LSLVAVHSDA WLLSVSFYFG SRFGFDRADR KRLFSMINEV PTVYEVVTGN
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.