Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049364 | Potato | nucleus | 99.17 | 99.17 |
| Solyc09g005360.2.1 | Tomato | nucleus | 86.67 | 86.31 |
| Solyc10g085180.1.1 | Tomato | nucleus | 79.58 | 79.58 |
| GSMUA_Achr10P... | Banana | nucleus | 79.17 | 78.51 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 79.17 | 78.51 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 76.25 | 75.62 |
| Os07t0233300-01 | Rice | nucleus | 72.5 | 71.31 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 69.58 | 67.89 |
| OQU88744 | Sorghum | cytosol | 68.33 | 67.77 |
| Os03t0818300-01 | Rice | nucleus | 69.17 | 67.21 |
| Zm00001d005185_P001 | Maize | nucleus | 67.08 | 66.81 |
| EES00286 | Sorghum | nucleus | 65.83 | 65.29 |
| Solyc01g102760.2.1 | Tomato | nucleus | 67.08 | 64.92 |
| Solyc06g051420.2.1 | Tomato | nucleus | 66.25 | 64.9 |
| Zm00001d034627_P002 | Maize | nucleus | 67.5 | 64.8 |
| EER90633 | Sorghum | nucleus | 67.08 | 64.4 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 66.67 | 63.74 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 66.25 | 63.35 |
| OQU77499 | Sorghum | nucleus | 66.67 | 63.24 |
| Zm00001d010834_P001 | Maize | nucleus | 66.67 | 63.24 |
| Solyc01g102750.2.1 | Tomato | nucleus | 65.42 | 63.05 |
| Solyc07g041190.2.1 | Tomato | nucleus | 64.58 | 63.01 |
| Solyc06g062850.2.1 | Tomato | nucleus | 66.25 | 61.87 |
| Solyc05g032770.2.1 | Tomato | nucleus | 44.17 | 61.63 |
| Solyc12g096040.1.1 | Tomato | nucleus | 65.0 | 61.42 |
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 24.58 | 60.82 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 64.58 | 60.31 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 64.58 | 60.31 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 64.17 | 59.92 |
| Zm00001d037537_P001 | Maize | nucleus | 62.5 | 58.14 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 27.92 | 55.37 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 61.25 | 53.45 |
| Solyc03g121930.2.1 | Tomato | nucleus | 56.25 | 48.91 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 64.58 | 45.72 |
| Os05t0163100-01 | Rice | nucleus | 40.83 | 36.84 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 32.92 | 36.07 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 32.92 | 36.07 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 21.25 | 34.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4D211 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc10g076690.1 | EnsemblPlants:Solyc10g076690.1.1 | UniParc:UPI0002769F08 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr10:-:59632543..59638502
Molecular Weight (calculated)
27135.8 Da
IEP (calculated)
5.981
GRAVY (calculated)
-0.659
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSISSNPKT VEEIFKDYSS RRSGIVRALT HDVDEFYNLC DPEKENLCLY GHPNETWEVN LPAEEVPPEL PEPALGINFA RDGMNRRDWL SLVAVHSDCW
101: LLSVAFFFGT RLNQNERKRL FSMINELPTA FEIVAERKHV KEKPTADSGS KSRGSTKKSS DSQAKSTPKL ADESYPEEEE HGETLCGSCG GNYSADEFWI
201: GCDICERWFH GKCVKITPAK AESIKQYKCP SCSLKRSRVQ
101: LLSVAFFFGT RLNQNERKRL FSMINELPTA FEIVAERKHV KEKPTADSGS KSRGSTKKSS DSQAKSTPKL ADESYPEEEE HGETLCGSCG GNYSADEFWI
201: GCDICERWFH GKCVKITPAK AESIKQYKCP SCSLKRSRVQ
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.