Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77499 | Sorghum | nucleus | 80.17 | 76.68 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 71.49 | 71.49 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 70.66 | 70.66 |
| GSMUA_Achr10P... | Banana | nucleus | 70.66 | 70.66 |
| Solyc09g005360.2.1 | Tomato | nucleus | 68.18 | 68.46 |
| PGSC0003DMT400059399 | Potato | nucleus | 67.77 | 68.05 |
| KRH38049 | Soybean | nucleus | 66.12 | 67.23 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 66.94 | 67.22 |
| KRH65724 | Soybean | nucleus | 65.7 | 66.53 |
| KRH00242 | Soybean | nucleus | 65.7 | 66.53 |
| KRH49390 | Soybean | nucleus | 65.29 | 66.11 |
| Solyc10g076690.1.1 | Tomato | nucleus | 65.29 | 65.83 |
| PGSC0003DMT400049364 | Potato | nucleus | 64.88 | 65.42 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 64.88 | 64.61 |
| CDX73886 | Canola | nucleus | 63.64 | 62.86 |
| AT3G11200.1 | Thale cress | nucleus | 63.64 | 62.6 |
| CDY00726 | Canola | nucleus | 63.22 | 62.45 |
| AT5G05610.1 | Thale cress | nucleus | 61.98 | 62.24 |
| Solyc10g085180.1.1 | Tomato | nucleus | 61.57 | 62.08 |
| PGSC0003DMT400028638 | Potato | nucleus | 61.57 | 62.08 |
| Bra034169.1-P | Field mustard | nucleus | 64.05 | 62.0 |
| CDY08544 | Canola | nucleus | 63.22 | 61.94 |
| Bra034860.1-P | Field mustard | nucleus | 63.22 | 61.94 |
| CDY36305 | Canola | cytosol | 63.64 | 61.6 |
| KRH56367 | Soybean | peroxisome | 55.79 | 61.36 |
| CDY01002 | Canola | nucleus | 63.22 | 61.2 |
| Solyc06g051420.2.1 | Tomato | nucleus | 61.57 | 60.82 |
| KRH69940 | Soybean | peroxisome | 54.13 | 59.55 |
| EER90633 | Sorghum | nucleus | 60.33 | 58.4 |
| CDX70142 | Canola | cytosol | 57.85 | 58.33 |
| Bra009121.1-P | Field mustard | nucleus | 57.44 | 57.92 |
| CDX98851 | Canola | nucleus | 57.02 | 57.5 |
| OQU88744 | Sorghum | cytosol | 57.44 | 57.44 |
| Bra001393.1-P | Field mustard | nucleus | 58.68 | 56.8 |
| EES08261 | Sorghum | nucleus | 59.5 | 56.69 |
| EES18243 | Sorghum | nucleus | 59.5 | 56.03 |
| KXG33847 | Sorghum | nucleus | 58.26 | 55.08 |
| KXG26388 | Sorghum | cytosol | 56.61 | 54.8 |
| EES05274 | Sorghum | nucleus | 57.85 | 54.69 |
| OQU78932 | Sorghum | nucleus | 58.26 | 54.44 |
| EER97523 | Sorghum | nucleus | 56.2 | 50.56 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 25.21 | 50.41 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 57.44 | 48.26 |
| OQU77873 | Sorghum | cytosol | 35.12 | 34.14 |
| KXG21847 | Sorghum | cytosol, plastid | 35.95 | 30.0 |
| OQU77872 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 27.69 | 29.91 |
| KXG24231 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 31.41 | 28.15 |
| OQU77871 | Sorghum | cytosol | 12.4 | 26.32 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:8075126 | InterPro:Alfin | UniProt:C5XP83 | EnsemblPlants:EES00286 |
| ProteinID:EES00286 | ProteinID:EES00286.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 |
| GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | ProteinID:OQU86275.1 | PFAM:PF00628 | PFAM:PF12165 |
| ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF37 | SMART:SM00249 | EnsemblPlantsGene:SORBI_3003G062400 |
| SUPFAM:SSF57903 | unigene:Sbi.8816 | UniParc:UPI0001A8469C | RefSeq:XP_002455166.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:5445422..5451615
Molecular Weight (calculated)
27202.9 Da
IEP (calculated)
6.249
GRAVY (calculated)
-0.599
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDAASGRGH VVYPPRSAED IFKDYRARRS AILRALTHEV EVFYAQCDPD KENLCLYGYA NEAWEVALPA EEVPTELPEP ALGINFARDG MNRRDWLALV
101: AVHSDSWLLS VAFYYAARLN RNDRKRLFGM INELQTVFEV VSGARQQQSK ERSSMDNGGR SKPVKIENNG KATDEAYGED DSDHGETLCG TCGGIYSADE
201: FWIGCDMCER WYHGKCVKIT PAKADSIKHY KCPSCSSKRA RQ
101: AVHSDSWLLS VAFYYAARLN RNDRKRLFGM INELQTVFEV VSGARQQQSK ERSSMDNGGR SKPVKIENNG KATDEAYGED DSDHGETLCG TCGGIYSADE
201: FWIGCDMCER WYHGKCVKIT PAKADSIKHY KCPSCSSKRA RQ
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.