CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77871	Sorghum	cytosol	47.32	92.98
OQU77873	Sorghum	cytosol	55.36	49.8
TraesCS7A01G097400.1	Wheat	cytosol	31.25	31.96
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	30.36	31.05
TraesCS4A01G397400.1	Wheat	cytosol, nucleus, plastid	30.36	31.05
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.91	30.59
GSMUA_Achr10P...	Banana	nucleus	7.59	30.36
OQU88744	Sorghum	cytosol	32.59	30.17
EER90633	Sorghum	nucleus	33.48	30.0
EES18243	Sorghum	nucleus	34.38	29.96
EES08261	Sorghum	nucleus	33.93	29.92
TraesCS4A01G397500.1	Wheat	cytosol	29.02	29.68
OQU78932	Sorghum	nucleus	33.93	29.34
KXG33847	Sorghum	nucleus	33.04	28.91
EES05274	Sorghum	nucleus	32.59	28.52
OQU77499	Sorghum	nucleus	32.14	28.46
EES00286	Sorghum	nucleus	29.91	27.69
EER97523	Sorghum	nucleus	32.59	27.14
OQU88643	Sorghum	extracellular, golgi, mitochondrion	14.29	26.45
KXG26388	Sorghum	cytosol	29.46	26.4
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.8	25.56
TraesCS7D01G093600.1	Wheat	plastid	32.14	24.66
KXG21847	Sorghum	cytosol, plastid	31.7	24.48
TraesCS7D01G093700.1	Wheat	plastid	32.14	23.68
HORVU0Hr1G025310.1	Barley	plastid	12.95	17.37
HORVU7Hr1G021380.1	Barley	plastid	14.29	16.33

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	UniProt:A0A1Z5R275	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:OQU77872
ProteinID:OQU77872	ProteinID:OQU77872.1	PFAM:PF00628	PFAM:PF12165	PANTHER:PTHR12321	PANTHER:PTHR12321:SF94
SMART:SM00249	EnsemblPlantsGene:SORBI_3009G115950	SUPFAM:SSF57903	UniParc:UPI000B8B9675	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45827831..45832084

Molecular Weight (calculated)

25757.0 Da

IEP (calculated)

4.344

GRAVY (calculated)

-0.717

Length

224 amino acids

Sequence
(BLAST)

001: MQPLHLYGGR NGSWEVKPPA LKLRAPAMPE PTPGINIWRD TMERQKWLQK VAVHCDEWLM KISSFAAKYI AATERVLLFT MLTDLPSIEE ILLANSDMSR
101: CMYHIEEKSS SGPEANAVVE EEKEERSSGP DEANEVVEEQ EVYYMEEQRS SGPTKANEVL EEEDDVINDD NDYCASCNSR YKANAFWICC DECGKWYHEK
201: CVNITSSEAE HKERYECPER VGWS

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.