CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21847	Sorghum	cytosol, plastid	43.33	40.34
OQU77873	Sorghum	cytosol	32.59	35.34
GSMUA_Achr10P...	Banana	nucleus	7.04	33.93
OQU88744	Sorghum	cytosol	30.0	33.47
OQU77871	Sorghum	cytosol	13.7	32.46
EES08261	Sorghum	nucleus	29.63	31.5
EES00286	Sorghum	nucleus	28.15	31.41
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	25.56	30.8
EES18243	Sorghum	nucleus	29.26	30.74
OQU78932	Sorghum	nucleus	29.26	30.5
EER90633	Sorghum	nucleus	28.15	30.4
KXG33847	Sorghum	nucleus	28.52	30.08
KXG26388	Sorghum	cytosol	27.41	29.6
OQU88643	Sorghum	extracellular, golgi, mitochondrion	12.96	28.93
OQU77499	Sorghum	nucleus	27.04	28.85
TraesCS4A01G397400.1	Wheat	cytosol, nucleus, plastid	23.33	28.77
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	23.33	28.77
EER97523	Sorghum	nucleus	28.52	28.62
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	22.96	28.31
EES05274	Sorghum	nucleus	26.67	28.12
TraesCS7A01G097400.1	Wheat	cytosol	22.59	27.85
TraesCS4A01G397500.1	Wheat	cytosol	22.22	27.4
TraesCS7D01G093600.1	Wheat	plastid	28.89	26.71
TraesCS7D01G093700.1	Wheat	plastid	29.26	25.99
HORVU7Hr1G021380.1	Barley	plastid	17.41	23.98
HORVU0Hr1G025310.1	Barley	plastid	13.7	22.16

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	UniProt:A0A1B6PEV8	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KXG24231
ProteinID:KXG24231	ProteinID:KXG24231.1	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF39	SMART:SM00249	EnsemblPlantsGene:SORBI_3007G011900	SUPFAM:SSF57903	UniParc:UPI00081AC46C
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

hypothetical protein

Coordinates

chr7:-:1101866..1105663

Molecular Weight (calculated)

30934.0 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.426

Length

270 amino acids

Sequence
(BLAST)

001: MDSTPPSLTI TRIRSLPMRS QLAMNVPMEE VQTLPQTLSP LARSTPSYTA GKIFLDFTYR HLGLIRAVTE ALPLYNHTEK EGFFGKHDQG AHSLYLYGNI
101: DGSWELRQSK PNELLGINLV RGNLKHTKWL EHIAMHGDAW LINISFSLSQ HMKAKEREVL FNMINSFPTV HETFLASETY HRMCQLEEKA KLCGTVIEKN
201: YEPESEDEAL SDPAVCSVCD GHYHTSAFWI CCDICNQWYH GKCVKITTKK AKRIKHFECP ECFNDRTGHN

Best Arabidopsis Sequence Match ( AT2G02470.2 )
(BLAST)

001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP

Arabidopsis Description

AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.