Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 2
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 2
- nucleus 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | extracellular | 51.79 | 20.14 |
| GSMUA_AchrUn_... | Banana | plastid | 42.86 | 18.75 |
| OQU77871 | Sorghum | cytosol | 33.93 | 16.67 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 42.86 | 9.92 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 42.86 | 9.92 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 44.64 | 9.77 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 42.86 | 9.56 |
| GSMUA_Achr11P... | Banana | nucleus | 42.86 | 9.52 |
| GSMUA_Achr10P... | Banana | nucleus | 41.07 | 9.5 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 42.86 | 9.49 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 42.86 | 9.49 |
| GSMUA_Achr10P... | Banana | nucleus | 42.86 | 9.45 |
| GSMUA_Achr10P... | Banana | nucleus | 37.5 | 9.21 |
| GSMUA_Achr10P... | Banana | nucleus | 41.07 | 9.13 |
| GSMUA_Achr10P... | Banana | nucleus | 41.07 | 8.85 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 39.29 | 8.7 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 39.29 | 8.7 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 32.14 | 8.22 |
| TraesCS4A01G397400.1 | Wheat | cytosol, nucleus, plastid | 32.14 | 8.22 |
| TraesCS7A01G097400.1 | Wheat | cytosol | 32.14 | 8.22 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 32.14 | 8.22 |
| OQU77873 | Sorghum | cytosol | 35.71 | 8.03 |
| TraesCS4A01G397500.1 | Wheat | cytosol | 30.36 | 7.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.07 | 7.62 |
| OQU77872 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 30.36 | 7.59 |
| KXG24231 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 33.93 | 7.04 |
| KXG21847 | Sorghum | cytosol, plastid | 35.71 | 6.9 |
| TraesCS7D01G093600.1 | Wheat | plastid | 33.93 | 6.51 |
| TraesCS7D01G093700.1 | Wheat | plastid | 33.93 | 6.25 |
| GSMUA_Achr10P... | Banana | cytosol | 8.93 | 2.59 |
| GSMUA_Achr10P... | Banana | cytosol | 5.36 | 1.66 |
| GSMUA_Achr10P... | Banana | cytosol | 1.79 | 0.67 |
| GSMUA_Achr10P... | Banana | cytosol | 1.79 | 0.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
| HORVU0Hr1G025310.1 | Barley | plastid | 0.0 | 0.0 |
| HORVU7Hr1G021380.1 | Barley | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G04350_001 |
| EnsemblPlants:GSMUA_Achr10P04350_001 | EnsemblPlants:GSMUA_Achr10T04350_001 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M0RFB2 | PFAM:PF00628 |
| ScanProsite:PS01359 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF37 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000296451A |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | : |
Description
Putative PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04350_001]
Coordinates
chr10:+:14010305..14010475
Molecular Weight (calculated)
6286.6 Da
IEP (calculated)
7.662
GRAVY (calculated)
0.020
Length
56 amino acids
Sequence
(BLAST)
(BLAST)
1: MCGVCGIRFS DGDHWVFCGM CITWYHGRCV AVTPEQLKSI KQYRCPSCCS YEGATT
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.