Factsheet for GSMUA_Achr10P05940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	29.39	55.37
GSMUA_Achr7P15530_001	Banana	nucleus	58.33	54.96
GSMUA_Achr10P...	Banana	nucleus	57.89	54.55
GSMUA_Achr2P18960_001	Banana	nucleus	56.58	53.31
GSMUA_Achr8P30680_001	Banana	nucleus	55.26	50.2
GSMUA_Achr7P02940_001	Banana	nucleus	53.51	48.22
GSMUA_Achr3P16750_001	Banana	nucleus	53.51	48.22
GSMUA_Achr8P32300_001	Banana	nucleus	53.07	47.27
GSMUA_Achr10P...	Banana	nucleus	52.63	47.24
GSMUA_Achr6P28820_001	Banana	nucleus	52.19	47.04
GSMUA_Achr11P...	Banana	nucleus	50.88	46.03
GSMUA_Achr2P05660_001	Banana	nucleus	50.88	45.85
GSMUA_Achr10P...	Banana	nucleus	46.05	41.67
GSMUA_AchrUn_...	Banana	plastid	21.93	39.06
GSMUA_Achr10P...	Banana	cytosol	25.44	38.67
GSMUA_Achr10P...	Banana	cytosol	30.26	38.12
GSMUA_Achr10P...	Banana	nucleus	9.21	37.5
GSMUA_AchrUn_...	Banana	nucleus	45.18	34.11
GSMUA_Achr10P...	Banana	nucleus	35.53	31.15
GSMUA_Achr10P...	Banana	cytosol	25.0	29.53
GSMUA_Achr10P...	Banana	cytosol	24.56	29.32
GSMUA_Achr10P...	Banana	extracellular	15.79	25.0

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G05940_001	EnsemblPlants:GSMUA_Achr10P05940_001	EnsemblPlants:GSMUA_Achr10T05940_001	InterPro:IPR013083
InterPro:IPR019787	UniProt:M0RFS1	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF96	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000296BA00	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr10G05940_001]

Coordinates

chr10:+:16435135..16438347

Molecular Weight (calculated)

25934.8 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.593

Length

228 amino acids

Sequence
(BLAST)

001: MEMVASLPAP STVEEVFRDY LGRHRGLVRA LTAEVDDLYA LCHPERENLC LYGHPDGSWE VNVPPEEVPP EMPEPTLGIN FARNGPKRWD WLSRVAMHSD
101: SWLLSVAFFF AARFSGDERK RLFNLINDLP TIFEAFCSHQ LTKKNTRVDR GSKPMRSSKR LKTVNNGSDE DANEISATSC GSCGTKHRSN FWIQCDVCER
201: SFHGKCVKMT RAKAEKTKRY RCPSCSSK

Best Arabidopsis Sequence Match ( AT2G02470.1 )
(BLAST)

001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP

Arabidopsis Description

AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.