Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P15530_001 | Banana | nucleus | 95.87 | 95.87 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 92.15 | 92.15 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 80.58 | 80.25 |
| KRH38049 | Soybean | nucleus | 78.51 | 79.83 |
| Solyc10g076690.1.1 | Tomato | nucleus | 78.51 | 79.17 |
| KRH65724 | Soybean | nucleus | 78.1 | 79.08 |
| PGSC0003DMT400049364 | Potato | nucleus | 77.69 | 78.33 |
| KRH49390 | Soybean | nucleus | 77.27 | 78.24 |
| PGSC0003DMT400059399 | Potato | nucleus | 77.69 | 78.01 |
| Solyc09g005360.2.1 | Tomato | nucleus | 77.27 | 77.59 |
| KRH00242 | Soybean | nucleus | 76.45 | 77.41 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 76.45 | 76.76 |
| AT3G11200.1 | Thale cress | nucleus | 74.38 | 73.17 |
| AT5G05610.1 | Thale cress | nucleus | 72.73 | 73.03 |
| Os07t0233300-01 | Rice | nucleus | 73.55 | 72.95 |
| CDX73886 | Canola | nucleus | 73.55 | 72.65 |
| Solyc10g085180.1.1 | Tomato | nucleus | 71.9 | 72.5 |
| Bra034860.1-P | Field mustard | nucleus | 73.55 | 72.06 |
| CDY08544 | Canola | nucleus | 73.55 | 72.06 |
| Bra034169.1-P | Field mustard | nucleus | 74.38 | 72.0 |
| CDY00726 | Canola | nucleus | 72.73 | 71.84 |
| PGSC0003DMT400028638 | Potato | nucleus | 71.07 | 71.67 |
| CDY36305 | Canola | cytosol | 73.97 | 71.6 |
| CDY01002 | Canola | nucleus | 73.55 | 71.2 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 72.31 | 71.14 |
| Os03t0818300-01 | Rice | nucleus | 72.31 | 70.85 |
| EES00286 | Sorghum | nucleus | 70.66 | 70.66 |
| OQU88744 | Sorghum | cytosol | 69.83 | 69.83 |
| OQU77499 | Sorghum | nucleus | 71.07 | 67.98 |
| Zm00001d010834_P001 | Maize | nucleus | 71.07 | 67.98 |
| CDX98851 | Canola | nucleus | 67.36 | 67.92 |
| Zm00001d005185_P001 | Maize | nucleus | 67.36 | 67.63 |
| CDX70142 | Canola | cytosol | 66.94 | 67.5 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 71.49 | 67.32 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 71.49 | 67.32 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 71.49 | 67.32 |
| KRH56367 | Soybean | peroxisome | 61.16 | 67.27 |
| Bra009121.1-P | Field mustard | nucleus | 66.53 | 67.08 |
| Zm00001d034627_P002 | Maize | nucleus | 69.01 | 66.8 |
| EER90633 | Sorghum | nucleus | 68.18 | 66.0 |
| Bra001393.1-P | Field mustard | nucleus | 67.77 | 65.6 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 67.77 | 65.34 |
| Solyc06g051420.2.1 | Tomato | nucleus | 66.12 | 65.31 |
| KRH69940 | Soybean | peroxisome | 59.09 | 65.0 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 67.36 | 64.94 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.82 | 63.64 |
| Zm00001d037537_P001 | Maize | nucleus | 66.94 | 62.79 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 64.46 | 62.15 |
| GSMUA_Achr10P... | Banana | nucleus | 64.88 | 61.81 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 64.46 | 61.66 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 62.81 | 60.08 |
| GSMUA_Achr11P... | Banana | nucleus | 61.98 | 59.52 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 61.98 | 59.29 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 61.98 | 58.59 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 61.16 | 58.5 |
| GSMUA_Achr10P... | Banana | nucleus | 54.55 | 57.89 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 67.36 | 56.6 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 27.69 | 55.37 |
| GSMUA_AchrUn_... | Banana | plastid | 28.93 | 54.69 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 61.57 | 54.18 |
| GSMUA_Achr10P... | Banana | nucleus | 54.13 | 51.98 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 71.49 | 51.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.31 | 42.72 |
| Os05t0163100-01 | Rice | nucleus | 45.87 | 41.73 |
| GSMUA_Achr10P... | Banana | cytosol | 30.99 | 41.44 |
| GSMUA_Achr10P... | Banana | nucleus | 9.5 | 41.07 |
| GSMUA_Achr10P... | Banana | cytosol | 25.21 | 40.67 |
| GSMUA_Achr10P... | Banana | nucleus | 40.5 | 37.69 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 21.07 | 34.0 |
| GSMUA_Achr10P... | Banana | cytosol | 26.03 | 32.98 |
| GSMUA_Achr10P... | Banana | cytosol | 25.21 | 31.61 |
| GSMUA_Achr10P... | Banana | extracellular | 16.94 | 28.47 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G23040_001 | EnsemblPlants:GSMUA_Achr10P23040_001 | EnsemblPlants:GSMUA_Achr10T23040_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0RKM9 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000294C609 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23040_001]
Coordinates
chr10:+:27938931..27945877
Molecular Weight (calculated)
27229.7 Da
IEP (calculated)
5.465
GRAVY (calculated)
-0.684
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGSISSAP RTVEEIFKDY SSRRAGIVRA LTHDVDEFYA QCDPEKENLC LYGHPNDSWE VNLPAEEVPP ELPEPALGIN FARDGMNRRD WLSLIAVHSD
101: SWLLSVAFYL GARLNRNERK RLFSMINELP TVFEVVSDRR RSKEKSGVDS ASKSKLSTKR SSEGQIKSNS KTADEEYGED DDEHSETLCG TCGGSYSADE
201: FWIACDVCER WFHGKCVKIT PAKAESIKQY KCPGCSSKKG RQ
101: SWLLSVAFYL GARLNRNERK RLFSMINELP TVFEVVSDRR RSKEKSGVDS ASKSKLSTKR SSEGQIKSNS KTADEEYGED DDEHSETLCG TCGGSYSADE
201: FWIACDVCER WFHGKCVKIT PAKAESIKQY KCPGCSSKKG RQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.