Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 58.94 | 70.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.83 | 64.46 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 50.33 | 60.32 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 49.01 | 58.96 |
| KRH19253 | Soybean | nucleus | 49.01 | 58.96 |
| KRH02655 | Soybean | nucleus | 49.01 | 58.73 |
| KRH37475 | Soybean | nucleus | 48.01 | 58.47 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 47.35 | 56.52 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 46.69 | 55.73 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 46.03 | 54.94 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 45.7 | 54.55 |
| GSMUA_Achr10P... | Banana | nucleus | 45.7 | 54.33 |
| GSMUA_Achr11P... | Banana | nucleus | 45.03 | 53.97 |
| GSMUA_Achr10P... | Banana | nucleus | 42.72 | 53.31 |
| Os07t0608400-01 | Rice | nucleus | 48.68 | 52.88 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 44.7 | 52.73 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 42.05 | 52.48 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 41.72 | 52.07 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 46.36 | 51.28 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 46.36 | 51.28 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 46.36 | 51.28 |
| EER97523 | Sorghum | nucleus | 45.36 | 50.93 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 16.56 | 49.51 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 46.03 | 45.87 |
| KRH61563 | Soybean | cytosol | 33.11 | 45.45 |
| GSMUA_Achr10P... | Banana | nucleus | 34.11 | 45.18 |
| GSMUA_AchrUn_... | Banana | plastid | 18.54 | 43.75 |
| Zm00001d022110_P002 | Maize | nucleus | 44.37 | 42.54 |
| GSMUA_Achr10P... | Banana | nucleus | 7.62 | 41.07 |
| GSMUA_Achr10P... | Banana | nucleus | 35.1 | 40.77 |
| GSMUA_Achr10P... | Banana | cytosol | 24.17 | 40.33 |
| GSMUA_Achr10P... | Banana | cytosol | 19.87 | 40.0 |
| GSMUA_Achr10P... | Banana | cytosol | 22.19 | 35.08 |
| GSMUA_Achr10P... | Banana | cytosol | 19.87 | 31.09 |
| GSMUA_Achr10P... | Banana | extracellular | 11.26 | 23.61 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_AchrUn_randomG01430_001 | EnsemblPlants:GSMUA_AchrUn_randomP01430_001 | EnsemblPlants:GSMUA_AchrUn_randomT01430_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0U5F5 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002965EC4 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Putative PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01430_001]
Coordinates
chrchrUn_random:-:5568395..5583672
Molecular Weight (calculated)
34363.5 Da
IEP (calculated)
7.411
GRAVY (calculated)
-0.547
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRGLTASEE DLVEYVFHDI KARRAGILKA LTADFEDFHQ QCDPAKENLC LYGFPDEHWE VNLPADEVPP EIPEPVLGIN FARDGTNKKD WLSLVAIHSD
101: AWLNALASYF GGRFQFDRTQ STDMWILGTY LCRRRICRQH SWTCVLRPSA TSLSSDRPFF LTFCCCFARK HLSVMIADLP TLCEVVSEMN LQRVSGSKHS
201: SNKSKSNSKL RASSEHQAKK SKSKHIKEEV EDLNGNDNND DEDKHLCASC GGNDSVGDYF WICCDACEKW YHGKCVRVTP AKAKHIKNYC CPRCSHSKRR
301: IS
101: AWLNALASYF GGRFQFDRTQ STDMWILGTY LCRRRICRQH SWTCVLRPSA TSLSSDRPFF LTFCCCFARK HLSVMIADLP TLCEVVSEMN LQRVSGSKHS
201: SNKSKSNSKL RASSEHQAKK SKSKHIKEEV EDLNGNDNND DEDKHLCASC GGNDSVGDYF WICCDACEKW YHGKCVRVTP AKAKHIKNYC CPRCSHSKRR
301: IS
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.