Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P28820_001 | Banana | nucleus | 88.54 | 88.54 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 86.17 | 86.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.11 | 85.95 |
| GSMUA_Achr10P... | Banana | nucleus | 82.61 | 82.28 |
| CDY17594 | Canola | cytosol | 38.34 | 82.2 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 80.63 | 80.63 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 78.66 | 77.73 |
| GSMUA_Achr11P... | Banana | nucleus | 76.28 | 76.59 |
| KRH51269 | Soybean | nucleus | 74.7 | 75.3 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 74.7 | 75.3 |
| KRH01887 | Soybean | nucleus | 74.7 | 75.0 |
| Solyc01g102760.2.1 | Tomato | nucleus | 72.33 | 73.79 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 73.52 | 73.52 |
| Solyc01g102750.2.1 | Tomato | nucleus | 72.33 | 73.49 |
| PGSC0003DMT400047018 | Potato | nucleus | 71.94 | 73.39 |
| Bra024817.1-P | Field mustard | nucleus | 69.57 | 71.54 |
| GSMUA_AchrUn_... | Banana | plastid | 35.97 | 71.09 |
| AT1G14510.1 | Thale cress | nucleus | 70.36 | 70.63 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 71.15 | 70.31 |
| CDY03049 | Canola | cytosol | 67.98 | 70.2 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 67.59 | 70.08 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 67.59 | 70.08 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 67.59 | 70.08 |
| Bra016698.1-P | Field mustard | cytosol | 68.38 | 69.2 |
| CDX84026 | Canola | nucleus | 68.38 | 69.2 |
| CDX96851 | Canola | cytosol | 68.38 | 69.2 |
| CDX81645 | Canola | cytosol | 65.61 | 68.31 |
| CDY53545 | Canola | cytosol | 65.61 | 68.31 |
| Bra026825.1-P | Field mustard | nucleus | 65.22 | 67.62 |
| Bra026210.1-P | Field mustard | nucleus | 65.61 | 66.4 |
| CDY65375 | Canola | nucleus | 63.64 | 65.98 |
| CDY45267 | Canola | nucleus | 52.17 | 64.71 |
| GSMUA_Achr10P... | Banana | nucleus | 61.66 | 64.46 |
| CDY17593 | Canola | cytosol | 30.04 | 64.41 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 60.47 | 63.22 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 59.68 | 62.4 |
| GSMUA_Achr10P... | Banana | nucleus | 59.29 | 59.52 |
| GSMUA_Achr10P... | Banana | nucleus | 48.22 | 53.51 |
| GSMUA_Achr10P... | Banana | cytosol | 35.18 | 49.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.52 | 47.35 |
| GSMUA_Achr10P... | Banana | cytosol | 28.06 | 47.33 |
| GSMUA_Achr10P... | Banana | nucleus | 47.04 | 45.77 |
| GSMUA_Achr10P... | Banana | nucleus | 8.7 | 39.29 |
| GSMUA_Achr10P... | Banana | cytosol | 28.85 | 38.22 |
| GSMUA_Achr10P... | Banana | cytosol | 28.06 | 36.79 |
| GSMUA_Achr10P... | Banana | extracellular | 19.37 | 34.03 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G16750_001 | EnsemblPlants:GSMUA_Achr3P16750_001 | EnsemblPlants:GSMUA_Achr3T16750_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0SF91 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002961E8F | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr3G16750_001]
Coordinates
chr3:-:18025655..18032543
Molecular Weight (calculated)
28279.0 Da
IEP (calculated)
5.277
GRAVY (calculated)
-0.774
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGAGGYNP RTPEQVFGDF RGRRAGIVKA LTTDVEKFYQ QCDPEKENLC LYGLPNETWE VNLPAEEVPP ELPEPALGIN FARDGMDERD WLSLVAVHSD
101: AWLLAVAFYF GARFGFDKES RKRLFNMING LPTIYEVVTG AARKQPKEKA HSSNGKSNKS GSKPSRSSES HAKTSKMPPP KEEESEGEDE DEEENGNTLC
201: GACGDNYGND EFWICCDICE KWFHGKCVKI TPARAEHIKQ YKCPACSTKR SRV
101: AWLLAVAFYF GARFGFDKES RKRLFNMING LPTIYEVVTG AARKQPKEKA HSSNGKSNKS GSKPSRSSES HAKTSKMPPP KEEESEGEDE DEEENGNTLC
201: GACGDNYGND EFWICCDICE KWFHGKCVKI TPARAEHIKQ YKCPACSTKR SRV
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.