Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 41.9 | 87.6 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 86.17 | 86.17 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 84.98 | 84.98 |
| CDY17594 | Canola | cytosol | 37.94 | 81.36 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 80.24 | 80.24 |
| GSMUA_Achr10P... | Banana | nucleus | 79.45 | 79.13 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 78.66 | 77.73 |
| GSMUA_Achr11P... | Banana | nucleus | 76.68 | 76.98 |
| KRH01887 | Soybean | nucleus | 73.91 | 74.21 |
| KRH51269 | Soybean | nucleus | 73.52 | 74.1 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 73.12 | 73.71 |
| Solyc01g102760.2.1 | Tomato | nucleus | 71.94 | 73.39 |
| PGSC0003DMT400047018 | Potato | nucleus | 71.15 | 72.58 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 72.33 | 72.33 |
| Solyc01g102750.2.1 | Tomato | nucleus | 71.15 | 72.29 |
| GSMUA_AchrUn_... | Banana | plastid | 35.97 | 71.09 |
| Bra024817.1-P | Field mustard | nucleus | 68.77 | 70.73 |
| AT1G14510.1 | Thale cress | nucleus | 70.36 | 70.63 |
| CDY03049 | Canola | cytosol | 67.98 | 70.2 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 70.36 | 69.53 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 66.8 | 69.26 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 66.8 | 69.26 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 66.8 | 69.26 |
| Bra016698.1-P | Field mustard | cytosol | 67.98 | 68.8 |
| CDX84026 | Canola | nucleus | 67.98 | 68.8 |
| CDX96851 | Canola | cytosol | 67.98 | 68.8 |
| CDX81645 | Canola | cytosol | 65.61 | 68.31 |
| CDY53545 | Canola | cytosol | 65.22 | 67.9 |
| Bra026825.1-P | Field mustard | nucleus | 65.22 | 67.62 |
| CDY65375 | Canola | nucleus | 64.43 | 66.8 |
| Bra026210.1-P | Field mustard | nucleus | 66.01 | 66.8 |
| CDY45267 | Canola | nucleus | 52.17 | 64.71 |
| CDY17593 | Canola | cytosol | 30.04 | 64.41 |
| GSMUA_Achr10P... | Banana | nucleus | 58.5 | 61.16 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 57.31 | 59.92 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 56.52 | 59.09 |
| GSMUA_Achr10P... | Banana | nucleus | 58.1 | 58.33 |
| GSMUA_Achr10P... | Banana | nucleus | 45.85 | 50.88 |
| GSMUA_Achr10P... | Banana | cytosol | 34.78 | 48.62 |
| GSMUA_Achr10P... | Banana | cytosol | 28.06 | 47.33 |
| GSMUA_Achr10P... | Banana | nucleus | 47.43 | 46.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.55 | 45.7 |
| GSMUA_Achr10P... | Banana | nucleus | 8.7 | 39.29 |
| GSMUA_Achr10P... | Banana | cytosol | 28.85 | 38.22 |
| GSMUA_Achr10P... | Banana | cytosol | 28.06 | 36.79 |
| GSMUA_Achr10P... | Banana | extracellular | 20.16 | 35.42 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr2G05660_001 | EnsemblPlants:GSMUA_Achr2P05660_001 | EnsemblPlants:GSMUA_Achr2T05660_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0S5F7 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002953691 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05660_001]
Coordinates
chr2:-:10724860..10729986
Molecular Weight (calculated)
28416.2 Da
IEP (calculated)
5.704
GRAVY (calculated)
-0.735
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGTEGYNS RTPEDVFRDF RGRRAGIVKA LTTDVEKFYQ KCDPEKENLC LYGLPNETWE VNLPVEEVPP ELPEPALGIN FARDGMGEKD WLSLVAVHSD
101: AWLLAVAFYF GARFGFDKES RNQLFQMINS LPTIYEVVTG ITKKQSKDKT PSSNGKSNKS SSKSSRPSES HAKASKMAPP TEEHSEGEDK DEEDHGNTLC
201: GACGDNYAND EFWICCDICE KWFHGKCVKI TPARAEHIKQ YKCPACTTKR VRT
101: AWLLAVAFYF GARFGFDKES RNQLFQMINS LPTIYEVVTG ITKKQSKDKT PSSNGKSNKS SSKSSRPSES HAKASKMAPP TEEHSEGEDK DEEDHGNTLC
201: GACGDNYAND EFWICCDICE KWFHGKCVKI TPARAEHIKQ YKCPACTTKR VRT
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.