Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P16750_001 | Banana | nucleus | 88.54 | 88.54 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 84.98 | 84.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.32 | 84.3 |
| CDY17594 | Canola | cytosol | 37.55 | 80.51 |
| GSMUA_Achr10P... | Banana | nucleus | 80.63 | 80.31 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 79.84 | 79.84 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 80.24 | 79.3 |
| GSMUA_Achr11P... | Banana | nucleus | 78.26 | 78.57 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 73.52 | 74.1 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 72.73 | 72.73 |
| KRH01887 | Soybean | nucleus | 71.94 | 72.22 |
| KRH51269 | Soybean | nucleus | 71.54 | 72.11 |
| Solyc01g102750.2.1 | Tomato | nucleus | 70.75 | 71.89 |
| GSMUA_AchrUn_... | Banana | plastid | 36.36 | 71.88 |
| PGSC0003DMT400047018 | Potato | nucleus | 70.36 | 71.77 |
| Solyc01g102760.2.1 | Tomato | nucleus | 70.36 | 71.77 |
| Bra024817.1-P | Field mustard | nucleus | 67.98 | 69.92 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 66.4 | 68.85 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 66.4 | 68.85 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 66.4 | 68.85 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 69.57 | 68.75 |
| AT1G14510.1 | Thale cress | nucleus | 67.98 | 68.25 |
| CDY03049 | Canola | cytosol | 66.01 | 68.16 |
| CDX84026 | Canola | nucleus | 66.8 | 67.6 |
| Bra016698.1-P | Field mustard | cytosol | 66.4 | 67.2 |
| CDX96851 | Canola | cytosol | 66.4 | 67.2 |
| CDX81645 | Canola | cytosol | 64.43 | 67.08 |
| CDY53545 | Canola | cytosol | 64.03 | 66.67 |
| Bra026825.1-P | Field mustard | nucleus | 63.64 | 65.98 |
| Bra026210.1-P | Field mustard | nucleus | 64.43 | 65.2 |
| CDY65375 | Canola | nucleus | 62.45 | 64.75 |
| CDY45267 | Canola | nucleus | 51.38 | 63.73 |
| GSMUA_Achr10P... | Banana | nucleus | 60.08 | 62.81 |
| CDY17593 | Canola | cytosol | 29.25 | 62.71 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 59.29 | 61.98 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 58.5 | 61.16 |
| GSMUA_Achr10P... | Banana | nucleus | 59.29 | 59.52 |
| GSMUA_Achr10P... | Banana | nucleus | 47.04 | 52.19 |
| GSMUA_Achr10P... | Banana | cytosol | 33.99 | 47.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.73 | 46.69 |
| GSMUA_Achr10P... | Banana | cytosol | 27.67 | 46.67 |
| GSMUA_Achr10P... | Banana | nucleus | 46.64 | 45.38 |
| GSMUA_Achr10P... | Banana | nucleus | 9.49 | 42.86 |
| GSMUA_Achr10P... | Banana | cytosol | 28.46 | 37.7 |
| GSMUA_Achr10P... | Banana | extracellular | 21.34 | 37.5 |
| GSMUA_Achr10P... | Banana | cytosol | 27.67 | 36.27 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr6G28820_001 | EnsemblPlants:GSMUA_Achr6P28820_001 | EnsemblPlants:GSMUA_Achr6T28820_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0TB27 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000295AA92 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28820_001]
Coordinates
chr6:+:29121063..29125923
Molecular Weight (calculated)
28572.6 Da
IEP (calculated)
5.764
GRAVY (calculated)
-0.753
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGAGGCNQ RSPEEVFRDF RGRRAGIVKA LTTDVEKFYR QCDPEKENLC LYGLPNETWE VNLPAEEVPP ELPEPALGIN FARDGMDEKD WLSLVAVHSD
101: AWLLAVSFYF GARFGFDKES RKRLFNMING LPTIYEVVTG ITKKESREKI RNSNGKSNKS GSKPSRSFES HAKATKMPSP KEEESEGEDV DEEEHGNTLC
201: GACGDNYAND EFWICCDMCE KWFHGKCVRI TPARAEHIKQ YKCPACSTKR ARP
101: AWLLAVSFYF GARFGFDKES RKRLFNMING LPTIYEVVTG ITKKESREKI RNSNGKSNKS GSKPSRSFES HAKATKMPSP KEEESEGEDV DEEEHGNTLC
201: GACGDNYAND EFWICCDMCE KWFHGKCVRI TPARAEHIKQ YKCPACSTKR ARP
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.