Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g006060.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Solyc07g006060.2.1 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047018 | Potato | nucleus | 98.39 | 98.79 |
| Solyc01g102760.2.1 | Tomato | nucleus | 92.37 | 92.74 |
| CDY17594 | Canola | cytosol | 40.96 | 86.44 |
| KRH01887 | Soybean | nucleus | 84.74 | 83.73 |
| KRH51269 | Soybean | nucleus | 84.34 | 83.67 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 84.74 | 83.4 |
| AT1G14510.1 | Thale cress | nucleus | 79.92 | 78.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.75 | 77.69 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 75.9 | 77.46 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 75.9 | 77.46 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 75.9 | 77.46 |
| Bra024817.1-P | Field mustard | nucleus | 75.5 | 76.42 |
| CDX84026 | Canola | nucleus | 76.71 | 76.4 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 78.31 | 76.17 |
| CDY03049 | Canola | cytosol | 74.7 | 75.92 |
| CDY53545 | Canola | cytosol | 73.9 | 75.72 |
| CDX96851 | Canola | cytosol | 75.9 | 75.6 |
| Bra016698.1-P | Field mustard | cytosol | 75.9 | 75.6 |
| Bra026825.1-P | Field mustard | nucleus | 73.49 | 75.0 |
| EES08261 | Sorghum | nucleus | 76.31 | 74.8 |
| CDX81645 | Canola | cytosol | 72.69 | 74.49 |
| Solyc05g032770.2.1 | Tomato | nucleus | 51.41 | 74.42 |
| Solyc12g096040.1.1 | Tomato | nucleus | 75.9 | 74.41 |
| Os11t0244800-01 | Rice | nucleus | 75.1 | 73.62 |
| GSMUA_Achr10P... | Banana | nucleus | 75.1 | 73.62 |
| Solyc07g041190.2.1 | Tomato | nucleus | 72.29 | 73.17 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 74.3 | 72.83 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 73.9 | 72.44 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 73.9 | 72.44 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 73.49 | 72.33 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 73.49 | 72.33 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 74.3 | 72.27 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 73.49 | 72.05 |
| Solyc06g062850.2.1 | Tomato | nucleus | 73.49 | 71.21 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 72.29 | 71.15 |
| Zm00001d010241_P002 | Maize | cytosol | 46.18 | 70.99 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 71.89 | 70.75 |
| CDY17593 | Canola | cytosol | 33.33 | 70.34 |
| GSMUA_Achr11P... | Banana | nucleus | 70.68 | 69.84 |
| EES05274 | Sorghum | nucleus | 71.49 | 69.53 |
| Zm00001d038208_P001 | Maize | nucleus | 71.08 | 69.14 |
| Os05t0419100-01 | Rice | nucleus | 71.49 | 68.99 |
| EES18243 | Sorghum | nucleus | 71.08 | 68.87 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 59.84 | 68.04 |
| OQU78932 | Sorghum | nucleus | 69.88 | 67.18 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 70.68 | 66.67 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 69.88 | 66.41 |
| GSMUA_AchrUn_... | Banana | plastid | 34.14 | 66.41 |
| Os02t0564100-01 | Rice | nucleus | 71.08 | 66.29 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 69.88 | 66.16 |
| KXG33847 | Sorghum | nucleus | 67.87 | 66.02 |
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 25.7 | 65.98 |
| Solyc09g005360.2.1 | Tomato | nucleus | 63.45 | 65.56 |
| Solyc10g076690.1.1 | Tomato | nucleus | 63.05 | 65.42 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 69.08 | 65.4 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 68.67 | 65.02 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 68.67 | 65.02 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 66.67 | 64.59 |
| Zm00001d041767_P002 | Maize | nucleus | 68.67 | 64.53 |
| Os01t0887700-01 | Rice | nucleus | 69.88 | 63.97 |
| Os04t0444900-01 | Rice | nucleus | 65.06 | 63.28 |
| KXG26388 | Sorghum | cytosol | 63.45 | 63.2 |
| Solyc10g085180.1.1 | Tomato | nucleus | 60.64 | 62.92 |
| Solyc06g051420.2.1 | Tomato | nucleus | 61.45 | 62.45 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 70.28 | 62.06 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 71.49 | 62.02 |
| Zm00001d012196_P005 | Maize | nucleus | 67.07 | 58.19 |
| Zm00001d023962_P001 | Maize | nucleus | 69.08 | 55.84 |
| Solyc03g121930.2.1 | Tomato | nucleus | 61.45 | 55.43 |
| Zm00001d025504_P001 | Maize | nucleus | 50.6 | 50.81 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 68.67 | 48.86 |
| GSMUA_Achr10P... | Banana | nucleus | 44.98 | 43.08 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 47.79 | 42.05 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 46.99 | 41.34 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 46.99 | 41.34 |
| Zm00001d025491_P002 | Maize | nucleus | 53.41 | 36.54 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 46.59 | 32.68 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.51 | 32.42 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.51 | 32.42 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4B1K3 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | SMART:SM00249 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc01g102750.2 | EnsemblPlants:Solyc01g102750.2.1 | UniParc:UPI0001CACA68 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:+:91484331..91489788
Molecular Weight (calculated)
28123.0 Da
IEP (calculated)
4.816
GRAVY (calculated)
-0.651
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSVPRTVE EVFSDFKSRR AALIKALTTD VEKFYQQCDP EKENLCLYGL PNETWEVNLP VEEVPPELPE PALGINFARD GMQEKDWLSL VAVHSDSWLL
101: SVAFYFGARF GFGKSDRKRL FQMINDLPTV FEVVTGAAKQ TRDAPHNNSN KSKSSGKPRQ PESQLKAVKV SPPKMENDSG EEEEEEEEDE QGATLCGACG
201: DNYATDEFWI CCDICERWFH GKCVKITPAK AEHIKQYKCP SCSSKRAKV
101: SVAFYFGARF GFGKSDRKRL FQMINDLPTV FEVVTGAAKQ TRDAPHNNSN KSKSSGKPRQ PESQLKAVKV SPPKMENDSG EEEEEEEEDE QGATLCGACG
201: DNYATDEFWI CCDICERWFH GKCVKITPAK AEHIKQYKCP SCSSKRAKV
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.