Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18243 | Sorghum | nucleus | 91.86 | 92.22 |
| Zm00001d010241_P002 | Maize | cytosol | 57.36 | 91.36 |
| Zm00001d038208_P001 | Maize | nucleus | 89.92 | 90.62 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 89.53 | 88.17 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 74.81 | 88.13 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 89.53 | 87.83 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 88.76 | 86.74 |
| CDY17594 | Canola | cytosol | 36.82 | 80.51 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 79.46 | 80.08 |
| Os01t0887700-01 | Rice | nucleus | 84.11 | 79.78 |
| Os11t0244800-01 | Rice | nucleus | 75.19 | 76.38 |
| Solyc01g102760.2.1 | Tomato | nucleus | 68.99 | 71.77 |
| PGSC0003DMT400047018 | Potato | nucleus | 68.99 | 71.77 |
| Solyc01g102750.2.1 | Tomato | nucleus | 68.99 | 71.49 |
| KRH01887 | Soybean | nucleus | 69.77 | 71.43 |
| KRH51269 | Soybean | nucleus | 69.38 | 71.31 |
| Bra024817.1-P | Field mustard | nucleus | 66.67 | 69.92 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 68.22 | 69.57 |
| CDY03049 | Canola | cytosol | 65.5 | 68.98 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 65.12 | 68.85 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 65.12 | 68.85 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 65.12 | 68.85 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 67.44 | 67.97 |
| CDY53545 | Canola | cytosol | 63.95 | 67.9 |
| CDX81645 | Canola | cytosol | 63.95 | 67.9 |
| CDX84026 | Canola | nucleus | 65.5 | 67.6 |
| AT1G14510.1 | Thale cress | nucleus | 65.89 | 67.46 |
| Bra026825.1-P | Field mustard | nucleus | 63.57 | 67.21 |
| Bra016698.1-P | Field mustard | cytosol | 65.12 | 67.2 |
| CDX96851 | Canola | cytosol | 65.12 | 67.2 |
| Os02t0564100-01 | Rice | nucleus | 67.44 | 65.17 |
| CDY65375 | Canola | nucleus | 61.24 | 64.75 |
| Bra026210.1-P | Field mustard | nucleus | 62.4 | 64.4 |
| CDY17593 | Canola | cytosol | 29.07 | 63.56 |
| CDY45267 | Canola | nucleus | 50.0 | 63.24 |
| Os04t0444900-01 | Rice | nucleus | 61.24 | 61.72 |
| Os07t0608400-01 | Rice | nucleus | 65.89 | 61.15 |
| Os07t0233300-01 | Rice | nucleus | 53.49 | 56.56 |
| Os03t0818300-01 | Rice | nucleus | 52.71 | 55.06 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 30.23 | 35.62 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 30.23 | 35.62 |
| Os01t0158800-00 | Rice | plastid | 27.13 | 29.41 |
| Os05t0163100-01 | Rice | nucleus | 30.23 | 29.32 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:4338816 | ProteinID:AAV25644.1 | EMBL:AK121400 | InterPro:Alfin |
| ProteinID:BAF17484.1 | ProteinID:BAS94060.1 | ProteinID:EEE63756.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlantsGene:Os05g0419100 |
| EnsemblPlants:Os05t0419100-01 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF79 | UniProt:Q60DW3 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000044D490 | RefSeq:XP_015640195.1 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Similar to Nucleic acid binding protein-like. (Os05t0419100-01)
Coordinates
chr5:+:20542371..20546991
Molecular Weight (calculated)
29106.0 Da
IEP (calculated)
5.291
GRAVY (calculated)
-0.852
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGSGGPYT SRTAEEVFRD FRGRRAGMIK ALTTDVEKFY QLCDPEKENL CLYGYPNETW EVTLPAEEVP PEIPEPALGI NFARDGMNEK DWLALVAVHS
101: DSWLLAVAFY FAARFGFDKE ARRRLFNMIN NLPTIFEVVT GAAKKQTKEK APNSTNKPNK PSSKMQPRPE SHSKAPKPPA PPKDDDESGD EYADEEEEER
201: DNTLCGSCGT NDGKDEFWIC CDSCERWYHG KCVKITPARA EHIKHYKCPD CGNKRARA
101: DSWLLAVAFY FAARFGFDKE ARRRLFNMIN NLPTIFEVVT GAAKKQTKEK APNSTNKPNK PSSKMQPRPE SHSKAPKPPA PPKDDDESGD EYADEEEEER
201: DNTLCGSCGT NDGKDEFWIC CDSCERWYHG KCVKITPARA EHIKHYKCPD CGNKRARA
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.