Factsheet for Os07t0608400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 19621931
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G179400.2	Wheat	nucleus	82.37	83.88
TraesCS2B01G198500.2	Wheat	nucleus	82.37	83.88
TraesCS2A01G172100.2	Wheat	nucleus	82.01	83.52
VIT_11s0016g01500.t01	Wine grape	nucleus	73.02	80.56
KRH19253	Soybean	nucleus	71.94	79.68
KRH37475	Soybean	nucleus	70.86	79.44
Bra006562.1-P	Field mustard	cytosol	19.78	78.57
CDY51845	Canola	cytosol	19.78	78.57
KRH02655	Soybean	nucleus	70.14	77.38
EER97523	Sorghum	nucleus	74.82	77.32
AT5G26210.1	Thale cress	nucleus	70.14	76.47
Bra036568.1-P	Field mustard	cytosol	69.42	75.1
CDY19781	Canola	cytosol	69.42	75.1
CDX87061	Canola	cytosol	69.06	74.71
HORVU2Hr1G031990.2	Barley	nucleus	81.3	74.59
CDY52629	Canola	nucleus	69.42	73.95
AT3G42790.1	Thale cress	nucleus	66.19	73.6
Bra009887.1-P	Field mustard	nucleus	69.06	73.56
CDX88221	Canola	nucleus	69.06	73.56
CDY70751	Canola	cytosol	66.19	72.44
Bra020107.1-P	Field mustard	cytosol	66.19	72.44
CDX92458	Canola	cytosol, nucleus, plastid	66.55	71.98
CDY16540	Canola	cytosol	67.63	71.76
CDY12340	Canola	cytosol, nucleus, plastid	65.11	71.26
Bra034950.1-P	Field mustard	nucleus	65.11	71.26
CDX87962	Canola	cytosol, nucleus, plastid	64.75	70.87
Os11t0244800-01	Rice	nucleus	64.03	70.08
AT5G20510.1	Thale cress	cytosol	65.47	70.0
CDY24988	Canola	cytosol, nucleus, plastid	62.59	69.6
CDY05535	Canola	cytosol, nucleus, plastid	63.31	69.29
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	63.31	69.29
VIT_11s0016g01630.t01	Wine grape	plastid	24.46	67.33
Bra002307.1-P	Field mustard	nucleus	67.27	66.31
Os04t0444900-01	Rice	nucleus	60.79	66.02
Os02t0564100-01	Rice	nucleus	63.31	65.92
Os05t0419100-01	Rice	nucleus	61.15	65.89
Zm00001d022110_P002	Maize	nucleus	74.46	65.71
Os01t0887700-01	Rice	nucleus	63.31	64.71
Os07t0233300-01	Rice	nucleus	54.68	62.3
GSMUA_Achr10P...	Banana	nucleus	55.04	60.71
Os03t0818300-01	Rice	nucleus	52.52	59.11
KRH61563	Soybean	cytosol	43.53	55.0
GSMUA_AchrUn_...	Banana	nucleus	52.88	48.68
Os05t0163100-01	Rice	nucleus	33.81	35.34
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	26.26	33.33
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	26.26	33.33
Os01t0158800-00	Rice	plastid	22.66	26.47

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EntrezGene:4343868	EMBL:AK109447	InterPro:Alfin	ProteinID:BAC84634.1
ProteinID:BAD32033.1	ProteinID:BAF22156.1	ProteinID:BAT02587.1	ProteinID:EEE67562.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787
EnsemblPlantsGene:Os07g0608400	EnsemblPlants:Os07t0608400-01	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF65	UniProt:Q6YTY3	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI00001BF770
RefSeq:XP_015647114.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Similar to nucleic acid binding protein [Oryza sativa (japonica cultivar-group)]. (Os07t0608400-01)

Coordinates

chr7:+:25013549..25017774

Molecular Weight (calculated)

30416.4 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.820

Length

278 amino acids

Sequence
(BLAST)

001: MDAQYNPRTV EEVFRDFKGR RAGLVRALTA DVEDFFRQCD PEKENLCLYG FPNEHWEVNL PAEEVPPELP EPALGINFAR DGMQEKDWLS MVAVHSDAWL
101: LSVAFYFGAR FGFDKNDRKR LFGMINDLPT IFEVVSGKSK AKPPSANNHS NSKSKSSNKT KSSEPRAKQP KPQPQPPVKN EGREEEGGPD DEEGGGGGGG
201: GGREEEHGET LCGACGESYG ADEFWICCDI CEKWFHGKCV KITPAKAEHI KQYKCPSCSG GNGGGGGVSG NGKRARPS

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.