Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra006562.1-P | Field mustard | cytosol | 24.23 | 90.0 |
CDY51845 | Canola | cytosol | 24.23 | 90.0 |
Bra020107.1-P | Field mustard | cytosol | 84.23 | 86.22 |
CDY70751 | Canola | cytosol | 84.23 | 86.22 |
CDY16540 | Canola | cytosol | 85.77 | 85.11 |
CDX92458 | Canola | cytosol, nucleus, plastid | 83.85 | 84.82 |
VIT_11s0016g01500.t01 | Wine grape | nucleus | 76.54 | 78.97 |
Bra002307.1-P | Field mustard | nucleus | 85.0 | 78.37 |
AT3G42790.1 | Thale cress | nucleus | 73.08 | 76.0 |
GSMUA_Achr8P30680_001 | Banana | nucleus | 72.31 | 74.9 |
KRH71913 | Soybean | cytosol | 27.31 | 74.74 |
AT5G26210.1 | Thale cress | nucleus | 72.31 | 73.73 |
AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 66.15 | 67.19 |
TraesCS2D01G179400.2 | Wheat | nucleus | 69.23 | 65.93 |
TraesCS2B01G198500.2 | Wheat | nucleus | 69.23 | 65.93 |
TraesCS2A01G172100.2 | Wheat | nucleus | 69.23 | 65.93 |
AT1G14510.1 | Thale cress | nucleus | 63.46 | 65.48 |
Os07t0608400-01 | Rice | nucleus | 70.0 | 65.47 |
EER97523 | Sorghum | nucleus | 66.92 | 64.68 |
AT5G05610.1 | Thale cress | nucleus | 58.85 | 63.49 |
VIT_11s0016g01630.t01 | Wine grape | plastid | 24.62 | 63.37 |
AT3G11200.1 | Thale cress | nucleus | 58.85 | 62.2 |
HORVU2Hr1G031990.2 | Barley | nucleus | 69.23 | 59.41 |
Zm00001d022110_P002 | Maize | nucleus | 66.15 | 54.6 |
TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.31 | 32.42 |
TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.31 | 32.42 |
Protein Annotations
MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:832173 | UniProt:A0A178UN04 | ProteinID:AED92854.1 | EMBL:AF296833 |
Symbol:AL5 | ArrayExpress:AT5G20510 | EnsemblPlantsGene:AT5G20510 | RefSeq:AT5G20510 | TAIR:AT5G20510 | RefSeq:AT5G20510-TAIR-G |
EnsemblPlants:AT5G20510.1 | TAIR:AT5G20510.1 | InterPro:Alfin | Unigene:At.68535 | EMBL:BT015937 | EMBL:BT020505 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003714 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 |
GO:GO:0042393 | GO:GO:0046872 | GO:GO:1903507 | InterPro:IPR013083 | InterPro:IPR019787 | RefSeq:NP_197551.2 |
ProteinID:OAO95446.1 | PFAM:PF00628 | PFAM:PF12165 | PO:PO:0000293 | ScanProsite:PS01359 | PFscan:PS50016 |
PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | UniProt:Q5XEM9 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0000196E17 |
InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
Coordinates
chr5:-:6939813..6943011
Molecular Weight (calculated)
29593.3 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.768
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.