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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006562.1-P Field mustard cytosol 24.23 90.0
CDY51845 Canola cytosol 24.23 90.0
Bra020107.1-P Field mustard cytosol 84.23 86.22
CDY70751 Canola cytosol 84.23 86.22
CDY16540 Canola cytosol 85.77 85.11
CDX92458 Canola cytosol, nucleus, plastid 83.85 84.82
VIT_11s0016g01500.t01 Wine grape nucleus 76.54 78.97
Bra002307.1-P Field mustard nucleus 85.0 78.37
AT3G42790.1 Thale cress nucleus 73.08 76.0
GSMUA_Achr8P30680_001 Banana nucleus 72.31 74.9
KRH71913 Soybean cytosol 27.31 74.74
AT5G26210.1 Thale cress nucleus 72.31 73.73
AT2G02470.1 Thale cress cytosol, nucleus, plastid 66.15 67.19
TraesCS2D01G179400.2 Wheat nucleus 69.23 65.93
TraesCS2B01G198500.2 Wheat nucleus 69.23 65.93
TraesCS2A01G172100.2 Wheat nucleus 69.23 65.93
AT1G14510.1 Thale cress nucleus 63.46 65.48
Os07t0608400-01 Rice nucleus 70.0 65.47
EER97523 Sorghum nucleus 66.92 64.68
AT5G05610.1 Thale cress nucleus 58.85 63.49
VIT_11s0016g01630.t01 Wine grape plastid 24.62 63.37
AT3G11200.1 Thale cress nucleus 58.85 62.2
HORVU2Hr1G031990.2 Barley nucleus 69.23 59.41
Zm00001d022110_P002 Maize nucleus 66.15 54.6
TraesCSU01G246200.1 Wheat cytosol, nucleus, plastid 27.31 32.42
TraesCSU01G252500.1 Wheat cytosol, nucleus, plastid 27.31 32.42
Protein Annotations
MapMan:15.5.8Gene3D:3.30.40.10EntrezGene:832173UniProt:A0A178UN04ProteinID:AED92854.1EMBL:AF296833
Symbol:AL5ArrayExpress:AT5G20510EnsemblPlantsGene:AT5G20510RefSeq:AT5G20510TAIR:AT5G20510RefSeq:AT5G20510-TAIR-G
EnsemblPlants:AT5G20510.1TAIR:AT5G20510.1InterPro:AlfinUnigene:At.68535EMBL:BT015937EMBL:BT020505
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003714GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006325
GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009414GO:GO:0009628GO:GO:0009651GO:GO:0009987GO:GO:0016043GO:GO:0016569
GO:GO:0042393GO:GO:0046872GO:GO:1903507InterPro:IPR013083InterPro:IPR019787RefSeq:NP_197551.2
ProteinID:OAO95446.1PFAM:PF00628PFAM:PF12165PO:PO:0000293ScanProsite:PS01359PFscan:PS50016
PANTHER:PTHR12321PANTHER:PTHR12321:SF98UniProt:Q5XEM9SMART:SM00249SUPFAM:SSF57903UniParc:UPI0000196E17
InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
Coordinates
chr5:-:6939813..6943011
Molecular Weight (calculated)
29593.3 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.768
Length
260 amino acids
Sequence
(BLAST)
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.