Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19781 | Canola | cytosol | 91.37 | 90.66 |
| Bra036568.1-P | Field mustard | cytosol | 91.37 | 90.66 |
| CDX87061 | Canola | cytosol | 91.37 | 90.66 |
| CDY52629 | Canola | nucleus | 92.55 | 90.42 |
| Bra009887.1-P | Field mustard | nucleus | 92.16 | 90.04 |
| CDX88221 | Canola | nucleus | 92.16 | 90.04 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 83.14 | 84.13 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 81.57 | 83.2 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 81.96 | 82.28 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 81.96 | 82.28 |
| AT3G42790.1 | Thale cress | nucleus | 74.9 | 76.4 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 74.12 | 75.3 |
| AT5G20510.1 | Thale cress | cytosol | 73.73 | 72.31 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 28.24 | 71.29 |
| AT1G14510.1 | Thale cress | nucleus | 69.41 | 70.24 |
| Os07t0608400-01 | Rice | nucleus | 76.47 | 70.14 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 69.41 | 69.14 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 71.76 | 67.03 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 71.76 | 67.03 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 71.76 | 67.03 |
| EER97523 | Sorghum | nucleus | 68.24 | 64.68 |
| AT5G05610.1 | Thale cress | nucleus | 60.0 | 63.49 |
| AT3G11200.1 | Thale cress | nucleus | 60.0 | 62.2 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 70.59 | 59.41 |
| Zm00001d022110_P002 | Maize | nucleus | 67.84 | 54.92 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.8 | 34.7 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.8 | 34.7 |
Protein Annotations
| MapMan:15.5.8 | PDB:1WE9 | Gene3D:3.30.40.10 | EntrezGene:832690 | UniProt:A0A178U9E8 | ProteinID:AAC26230.1 |
| EMBL:AB493760 | ProteinID:AED93537.1 | EMBL:AK226367 | Symbol:AL4 | ArrayExpress:AT5G26210 | EnsemblPlantsGene:AT5G26210 |
| RefSeq:AT5G26210 | TAIR:AT5G26210 | RefSeq:AT5G26210-TAIR-G | EnsemblPlants:AT5G26210.1 | TAIR:AT5G26210.1 | EMBL:AY087173 |
| InterPro:Alfin | Unigene:At.49064 | EMBL:BT024475 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016569 | GO:GO:0035064 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 |
| RefSeq:NP_197993.1 | UniProt:O81488 | ProteinID:OAO90568.1 | PFAM:PF00628 | PFAM:PF12165 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF65 | SMART:SM00249 | SUPFAM:SSF57903 | TMHMM:TMhelix |
| UniParc:UPI00000A71AE | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
AL4AL4 [Source:UniProtKB/TrEMBL;Acc:A0A178U9E8]
Coordinates
chr5:-:9158318..9160493
Molecular Weight (calculated)
28780.5 Da
IEP (calculated)
4.738
GRAVY (calculated)
-0.717
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.