Factsheet for Bra020543.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05535	Canola	cytosol, nucleus, plastid	100.0	100.0
Bra036568.1-P	Field mustard	cytosol	83.86	82.88
AT5G26210.1	Thale cress	nucleus	82.28	81.96
Bra009887.1-P	Field mustard	nucleus	83.46	81.23
Bra006562.1-P	Field mustard	cytosol	22.05	80.0
VIT_11s0016g01500.t01	Wine grape	nucleus	77.95	78.57
GSMUA_Achr8P30680_001	Banana	nucleus	70.47	71.31
Bra020107.1-P	Field mustard	cytosol	68.9	68.9
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	63.39	65.98
Bra034950.1-P	Field mustard	nucleus	65.75	65.75
Bra024817.1-P	Field mustard	nucleus	62.6	64.63
TraesCS2D01G179400.2	Wheat	nucleus	69.29	64.47
TraesCS2B01G198500.2	Wheat	nucleus	69.29	64.47
TraesCS2A01G172100.2	Wheat	nucleus	69.29	64.47
VIT_11s0016g01630.t01	Wine grape	plastid	25.59	64.36
Os07t0608400-01	Rice	nucleus	69.29	63.31
Bra016698.1-P	Field mustard	cytosol	61.81	62.8
Bra002307.1-P	Field mustard	nucleus	68.9	62.06
Bra026210.1-P	Field mustard	nucleus	61.02	62.0
Bra026825.1-P	Field mustard	nucleus	58.66	61.07
Bra034860.1-P	Field mustard	nucleus	58.27	59.92
EER97523	Sorghum	nucleus	62.99	59.48
Bra034169.1-P	Field mustard	nucleus	58.27	59.2
Bra009121.1-P	Field mustard	nucleus	55.51	58.75
HORVU2Hr1G031990.2	Barley	nucleus	68.9	57.76
Bra001393.1-P	Field mustard	nucleus	55.51	56.4
Zm00001d022110_P002	Maize	nucleus	62.6	50.48
Bra005861.1-P	Field mustard	mitochondrion	27.17	37.91
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.13	33.79
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	29.13	33.79

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra020543	EnsemblPlants:Bra020543.1	EnsemblPlants:Bra020543.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4DVJ9	PFAM:PF00628
PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249
SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI0002546C92	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G26210 (E=2e-082) AL4 | AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding

Coordinates

chrA02:-:24675387..24676920

Molecular Weight (calculated)

28992.8 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.767

Length

254 amino acids

Sequence
(BLAST)

001: MNRDGAYNPR TVEEVFRDYN GRRNGMIKAL TTDVHEFHRL CDPEKENLCL YGLPSEDWEV NLPAEEVPPE LPEPVLGINF ARNGMLEKDW LSLVAVHSDA
101: WLMAVAFFFG ARFGFDKADR KRLFNMVNDL PTVFEVVTDF LARKLSKEKY SVSNNSSNRS KSNSKRGGSE ARPIAKPAPK EEEEEEEEND DDDEEGDTAC
201: GACGETYARD EFWICCDMCE NWFHGKCVKI TPARAEHIKQ YKCPSCSNNK RGRS

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.