Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra016698.1-P | |
| Bra026825.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11200.1 | Bra016698.1-P | AT1G14510.1 | 21798944 |
| AT3G11200.1 | Bra026825.1-P | AT1G14510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73886 | Canola | nucleus | 91.2 | 93.06 |
| CDY00726 | Canola | nucleus | 90.8 | 92.65 |
| Bra034860.1-P | Field mustard | nucleus | 89.2 | 90.28 |
| AT3G11200.1 | Thale cress | nucleus | 86.4 | 87.8 |
| Bra034169.1-P | Field mustard | nucleus | 87.2 | 87.2 |
| Bra009121.1-P | Field mustard | nucleus | 72.4 | 75.42 |
| PGSC0003DMT400059399 | Potato | nucleus | 71.2 | 73.86 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 70.4 | 72.43 |
| KRH38049 | Soybean | nucleus | 67.2 | 70.59 |
| KRH49390 | Soybean | nucleus | 67.2 | 70.29 |
| PGSC0003DMT400049364 | Potato | nucleus | 67.2 | 70.0 |
| KRH65724 | Soybean | nucleus | 66.8 | 69.87 |
| KRH00242 | Soybean | nucleus | 66.8 | 69.87 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 66.4 | 68.59 |
| PGSC0003DMT400028638 | Potato | nucleus | 65.6 | 68.33 |
| GSMUA_Achr10P... | Banana | nucleus | 65.6 | 67.77 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 64.0 | 66.12 |
| Solyc06g051420.2.1 | Tomato | nucleus | 64.0 | 65.31 |
| Bra006562.1-P | Field mustard | cytosol | 18.0 | 64.29 |
| KRH56367 | Soybean | peroxisome | 55.6 | 63.18 |
| KRH69940 | Soybean | peroxisome | 55.2 | 62.73 |
| Os07t0233300-01 | Rice | nucleus | 60.4 | 61.89 |
| OQU88744 | Sorghum | cytosol | 59.6 | 61.57 |
| Zm00001d005185_P001 | Maize | nucleus | 58.4 | 60.58 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 59.2 | 60.16 |
| Os03t0818300-01 | Rice | nucleus | 59.2 | 59.92 |
| Zm00001d034627_P002 | Maize | nucleus | 59.6 | 59.6 |
| EES00286 | Sorghum | nucleus | 56.8 | 58.68 |
| EER90633 | Sorghum | nucleus | 58.0 | 58.0 |
| Zm00001d010834_P001 | Maize | nucleus | 58.4 | 57.71 |
| OQU77499 | Sorghum | nucleus | 58.4 | 57.71 |
| Bra034950.1-P | Field mustard | nucleus | 58.4 | 57.48 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 57.6 | 57.37 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 57.2 | 56.97 |
| Bra020107.1-P | Field mustard | cytosol | 57.2 | 56.3 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 57.6 | 56.03 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 57.6 | 56.03 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 57.6 | 56.03 |
| Bra036568.1-P | Field mustard | cytosol | 57.2 | 55.64 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 56.4 | 55.51 |
| Bra024817.1-P | Field mustard | nucleus | 54.4 | 55.28 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 53.6 | 54.92 |
| Bra016698.1-P | Field mustard | cytosol | 54.4 | 54.4 |
| Zm00001d037537_P001 | Maize | nucleus | 55.6 | 53.88 |
| Bra009887.1-P | Field mustard | nucleus | 56.0 | 53.64 |
| Bra026825.1-P | Field mustard | nucleus | 52.0 | 53.28 |
| Bra002307.1-P | Field mustard | nucleus | 58.0 | 51.42 |
| Bra026210.1-P | Field mustard | nucleus | 50.0 | 50.0 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 52.0 | 47.27 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 22.8 | 47.11 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 57.6 | 42.48 |
| Bra005861.1-P | Field mustard | mitochondrion | 25.2 | 34.62 |
| Os05t0163100-01 | Rice | nucleus | 34.8 | 32.71 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 18.8 | 31.33 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 25.6 | 29.22 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 25.6 | 29.22 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | EnsemblPlantsGene:Bra001393 | EnsemblPlants:Bra001393.1 | EnsemblPlants:Bra001393.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M4CB14 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000254070E | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
AT3G11200 (E=3e-102) AL2 | AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding
Coordinates
chrA03:-:16160914..16162583
Molecular Weight (calculated)
28471.4 Da
IEP (calculated)
5.231
GRAVY (calculated)
-0.652
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVSSNPRT VEEIFKDYSA RRSALLRALT KDVDDFYSQC DPEKENLCLY GHPNESWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSYIY
101: CGLTHVYGRL DCCYFSSFLH LWKRLFSLIN DLPTLFDVVT GRKPIKDNKP SSDSGSKSRN GTKRSIEGQT KSPTPRLMEE SYEDEDEEED EHGDTLCGIC
201: GGNYTQDEFW ICCDVCERWY HGKCVKITPA KADSIKQYKC PPCCAKKGRQ
101: CGLTHVYGRL DCCYFSSFLH LWKRLFSLIN DLPTLFDVVT GRKPIKDNKP SSDSGSKSRN GTKRSIEGQT KSPTPRLMEE SYEDEDEEED EHGDTLCGIC
201: GGNYTQDEFW ICCDVCERWY HGKCVKITPA KADSIKQYKC PPCCAKKGRQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.