Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11200.1 | CDX81645 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX84026 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX96851 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDY53545 | AT1G14510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73886 | Canola | nucleus | 98.78 | 98.78 |
| CDY08544 | Canola | nucleus | 96.73 | 95.95 |
| CDY01002 | Canola | nucleus | 96.73 | 94.8 |
| AT3G11200.1 | Thale cress | nucleus | 93.88 | 93.5 |
| CDY36305 | Canola | cytosol | 95.1 | 93.2 |
| Bra001393.1-P | Field mustard | nucleus | 92.65 | 90.8 |
| CDX70142 | Canola | cytosol | 79.18 | 80.83 |
| PGSC0003DMT400059399 | Potato | nucleus | 77.55 | 78.84 |
| CDX98851 | Canola | nucleus | 77.14 | 78.75 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 76.73 | 77.37 |
| KRH38049 | Soybean | nucleus | 74.69 | 76.89 |
| KRH65724 | Soybean | nucleus | 74.29 | 76.15 |
| KRH49390 | Soybean | nucleus | 73.47 | 75.31 |
| KRH00242 | Soybean | nucleus | 73.47 | 75.31 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 87.35 | 74.31 |
| PGSC0003DMT400049364 | Potato | nucleus | 72.65 | 74.17 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 72.65 | 73.55 |
| GSMUA_Achr10P... | Banana | nucleus | 71.84 | 72.73 |
| PGSC0003DMT400028638 | Potato | nucleus | 70.61 | 72.08 |
| Solyc06g051420.2.1 | Tomato | nucleus | 71.43 | 71.43 |
| CDY17594 | Canola | cytosol | 34.29 | 71.19 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 70.2 | 71.07 |
| KRH56367 | Soybean | peroxisome | 60.82 | 67.73 |
| KRH69940 | Soybean | peroxisome | 60.0 | 66.82 |
| Os07t0233300-01 | Rice | nucleus | 66.12 | 66.39 |
| OQU88744 | Sorghum | cytosol | 64.49 | 65.29 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 64.9 | 64.63 |
| Zm00001d005185_P001 | Maize | nucleus | 63.27 | 64.32 |
| CDY51845 | Canola | cytosol | 18.37 | 64.29 |
| Os03t0818300-01 | Rice | nucleus | 64.49 | 63.97 |
| EES00286 | Sorghum | nucleus | 62.45 | 63.22 |
| Zm00001d034627_P002 | Maize | nucleus | 64.08 | 62.8 |
| OQU77499 | Sorghum | nucleus | 63.27 | 61.26 |
| EER90633 | Sorghum | nucleus | 62.45 | 61.2 |
| Zm00001d010834_P001 | Maize | nucleus | 62.86 | 60.87 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 62.86 | 60.63 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 62.04 | 60.56 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 62.04 | 60.56 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 62.45 | 60.24 |
| CDY70751 | Canola | cytosol | 62.04 | 59.84 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 59.18 | 59.43 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 59.18 | 59.43 |
| CDY19781 | Canola | cytosol | 62.04 | 59.14 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 62.04 | 59.14 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 62.04 | 59.14 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 62.04 | 59.14 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 62.04 | 59.14 |
| CDY16540 | Canola | cytosol | 62.86 | 58.78 |
| CDX81645 | Canola | cytosol | 57.96 | 58.44 |
| CDX84026 | Canola | nucleus | 59.59 | 58.4 |
| CDX96851 | Canola | cytosol | 59.59 | 58.4 |
| CDY03049 | Canola | cytosol | 58.37 | 58.37 |
| CDX87061 | Canola | cytosol | 61.22 | 58.37 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 60.41 | 58.27 |
| CDY53545 | Canola | cytosol | 57.55 | 58.02 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 58.78 | 57.6 |
| CDY52629 | Canola | nucleus | 61.22 | 57.47 |
| Zm00001d037537_P001 | Maize | nucleus | 60.41 | 57.36 |
| CDX88221 | Canola | nucleus | 60.82 | 57.09 |
| CDY45267 | Canola | nucleus | 46.12 | 55.39 |
| CDY65375 | Canola | nucleus | 54.29 | 54.51 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 26.53 | 53.72 |
| CDY17593 | Canola | cytosol | 24.49 | 50.85 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 56.73 | 50.55 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 62.04 | 44.84 |
| CDX80967 | Canola | mitochondrion | 28.57 | 38.67 |
| CDY11330 | Canola | mitochondrion | 28.57 | 38.04 |
| Os05t0163100-01 | Rice | nucleus | 36.73 | 33.83 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.76 | 31.05 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.76 | 31.05 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 18.78 | 30.67 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078EHZ2 | InterPro:Alfin | EnsemblPlants:CDY00726 | ProteinID:CDY00726 |
| ProteinID:CDY00726.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00110578001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EE38E8 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaC03g37100D
Coordinates
chrLK031921:-:505648..507934
Molecular Weight (calculated)
27871.7 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.743
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVSSNPRT VEEIFKDYTA RRSALLRALT KDVDDFYSQC DPEKENLCLY GHPNESWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSFYFGA RLNRNERKRV FSLINDLPTL FDVVTGRKPI KDNKPSSDSG SKSRNGTKRS IEGQTKSPTP RLMEESYEDE EEEEDEHGDT LCGICGGNYT
201: QDEFWICCDV CERWYHGKCV KITPAKADSI KQYKCPPCCA KKGRQ
101: LLSVSFYFGA RLNRNERKRV FSLINDLPTL FDVVTGRKPI KDNKPSSDSG SKSRNGTKRS IEGQTKSPTP RLMEESYEDE EEEEDEHGDT LCGICGGNYT
201: QDEFWICCDV CERWYHGKCV KITPAKADSI KQYKCPPCCA KKGRQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.