CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11330	Canola	mitochondrion	90.61	89.13
CDY17594	Canola	cytosol	32.04	49.15
GSMUA_Achr10P...	Banana	cytosol	27.07	32.67
CDX70142	Canola	cytosol	39.23	29.58
GSMUA_Achr10P...	Banana	cytosol	29.28	29.28
CDY08544	Canola	nucleus	39.78	29.15
CDX73886	Canola	nucleus	39.23	28.98
CDY01002	Canola	nucleus	39.78	28.8
CDX98851	Canola	nucleus	38.12	28.75
CDY04130	Canola	cytosol, nucleus, plastid	38.67	28.69
CDY17436	Canola	cytosol, nucleus, plastid	38.67	28.69
CDY00726	Canola	nucleus	38.67	28.57
CDY36305	Canola	cytosol	39.23	28.4
CDY53545	Canola	cytosol	38.12	28.4
CDX81645	Canola	cytosol	38.12	28.4
CDY03049	Canola	cytosol	37.57	27.76
CDY19781	Canola	cytosol	38.12	26.85
CDX96851	Canola	cytosol	37.02	26.8
CDX84026	Canola	nucleus	37.02	26.8
CDX87061	Canola	cytosol	37.57	26.46
CDY52629	Canola	nucleus	38.12	26.44
CDY24988	Canola	cytosol, nucleus, plastid	36.46	26.4
CDY05535	Canola	cytosol, nucleus, plastid	37.02	26.38
CDX92458	Canola	cytosol, nucleus, plastid	37.02	26.07
CDX88221	Canola	nucleus	37.57	26.05
GSMUA_Achr10P...	Banana	cytosol	27.07	25.65
CDY70751	Canola	cytosol	35.91	25.59
CDY16540	Canola	cytosol	37.02	25.57
CDY65375	Canola	nucleus	34.25	25.41
CDY36322	Canola	cytosol, plasma membrane, plastid	39.78	25.0
CDY12340	Canola	cytosol, nucleus, plastid	34.25	24.41
CDX87962	Canola	cytosol, nucleus, plastid	34.25	24.41
GSMUA_Achr10P...	Banana	cytosol	25.97	24.35
Os01t0158800-00	Rice	plastid	30.39	23.11
CDY45267	Canola	nucleus	25.41	22.55
CDY17593	Canola	cytosol	6.08	9.32
CDY51845	Canola	cytosol	2.21	5.71

Protein Annotations

EnsemblPlants:CDX80967	EnsemblPlantsGene:GSBRNA2T00134391001	GO:A0A078CW36	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	InterPro:Alfin	PANTHER:PTHR12321	PANTHER:PTHR12321:SF60	PFAM:PF12165	ProteinID:CDX80967
ProteinID:CDX80967.1	UniParc:UPI0004EE688B	MapMan:15.5.8	:	:	:

Description

BnaC03g02210D

Coordinates

chrLK031823:-:1064453..1065486

Molecular Weight (calculated)

20587.5 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.261

Length

181 amino acids

Sequence
(BLAST)

001: MFRRVVPSSS SAQNGDMHRR VTSSSPLISD DYIPRTVEHI FINYRLRRVG LLRAFGTDVG TLYNLCDPGY KGDLSLYGYP DGTWDVQEAC MVLPPNLPEP
101: AVGINLARDR MRAIDWVTLV AEHCDSWLLS LAFFFSVGLS RDDRDSLFER INDLPTLAEK VKEYYPGQLI QSRIQQANLE N

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.