Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009887.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY52629 | Canola | nucleus | 99.23 | 99.23 |
| CDX87061 | Canola | cytosol | 93.87 | 95.33 |
| CDY19781 | Canola | cytosol | 93.49 | 94.94 |
| AT5G26210.1 | Thale cress | nucleus | 90.04 | 92.16 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 81.61 | 85.2 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 80.84 | 83.73 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 81.23 | 83.46 |
| CDY51845 | Canola | cytosol | 21.46 | 80.0 |
| CDY17594 | Canola | cytosol | 34.87 | 77.12 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 72.8 | 75.7 |
| CDY70751 | Canola | cytosol | 73.18 | 75.2 |
| CDY16540 | Canola | cytosol | 74.33 | 74.05 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 72.8 | 73.93 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 70.11 | 72.05 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 69.35 | 71.26 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 65.13 | 69.67 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 65.13 | 69.67 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 26.82 | 69.31 |
| Os07t0608400-01 | Rice | nucleus | 73.56 | 69.06 |
| CDX84026 | Canola | nucleus | 65.13 | 68.0 |
| CDY03049 | Canola | cytosol | 63.22 | 67.35 |
| CDX96851 | Canola | cytosol | 64.37 | 67.2 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 70.11 | 67.03 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 70.11 | 67.03 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 70.11 | 67.03 |
| CDX81645 | Canola | cytosol | 61.3 | 65.84 |
| EER97523 | Sorghum | nucleus | 67.82 | 65.8 |
| CDY53545 | Canola | cytosol | 60.92 | 65.43 |
| CDY65375 | Canola | nucleus | 60.15 | 64.34 |
| CDY45267 | Canola | nucleus | 49.81 | 63.73 |
| CDY17593 | Canola | cytosol | 27.97 | 61.86 |
| CDX73886 | Canola | nucleus | 57.09 | 60.82 |
| CDY00726 | Canola | nucleus | 57.09 | 60.82 |
| CDY36305 | Canola | cytosol | 57.47 | 60.0 |
| CDY08544 | Canola | nucleus | 56.7 | 59.92 |
| CDY01002 | Canola | nucleus | 57.09 | 59.6 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 68.97 | 59.41 |
| CDX70142 | Canola | cytosol | 54.41 | 59.17 |
| CDX98851 | Canola | nucleus | 54.02 | 58.75 |
| Zm00001d022110_P002 | Maize | nucleus | 67.43 | 55.87 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 51.72 | 46.88 |
| CDX80967 | Canola | mitochondrion | 26.05 | 37.57 |
| CDY11330 | Canola | mitochondrion | 26.05 | 36.96 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.74 | 34.25 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.74 | 34.25 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078DG25 | InterPro:Alfin | EnsemblPlants:CDX88221 | ProteinID:CDX88221 |
| ProteinID:CDX88221.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00147694001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | TMHMM:TMhelix | UniParc:UPI000253F3C2 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA06g28120D
Coordinates
chrLK031854:-:1444214..1446482
Molecular Weight (calculated)
29385.1 Da
IEP (calculated)
4.633
GRAVY (calculated)
-0.836
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGDGGGA AYNPRTVEEV YRDFKGRRNG MIKALTTDVQ EFYRLCDPEK ENLCLYGHPN EHWEVNLPAE EVPPELPEPV LGINFARDGM MEKDWLSLVA
101: VHSDAWLLAV AFFFGARFGF DKADRKRLFN MMNDLPSIFE VVAGTAKKAS KEKSSVSNNS SNRSKSNSKR GSEPKPKYSK PEPKDEEEEE GVEEEDEDDD
201: DEQGETQCGA CGESYAADEF WICCDLCENW FHGKCVKITP ARAEHIKQYK CPSCSNKRAR S
101: VHSDAWLLAV AFFFGARFGF DKADRKRLFN MMNDLPSIFE VVAGTAKKAS KEKSSVSNNS SNRSKSNSKR GSEPKPKYSK PEPKDEEEEE GVEEEDEDDD
201: DEQGETQCGA CGESYAADEF WICCDLCENW FHGKCVKITP ARAEHIKQYK CPSCSNKRAR S
001: MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
Arabidopsis Description
AL4AL4 [Source:UniProtKB/TrEMBL;Acc:A0A178U9E8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.