Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G179400.2 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 99.63 | 99.63 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 93.41 | 84.16 |
| Os07t0608400-01 | Rice | nucleus | 83.88 | 82.37 |
| CDY51845 | Canola | cytosol | 20.88 | 81.43 |
| Bra006562.1-P | Field mustard | cytosol | 20.88 | 81.43 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 71.79 | 77.78 |
| KRH19253 | Soybean | nucleus | 69.6 | 75.7 |
| KRH37475 | Soybean | nucleus | 68.5 | 75.4 |
| KRH02655 | Soybean | nucleus | 67.77 | 73.41 |
| EER97523 | Sorghum | nucleus | 72.16 | 73.23 |
| AT5G26210.1 | Thale cress | nucleus | 67.03 | 71.76 |
| Bra020107.1-P | Field mustard | cytosol | 66.3 | 71.26 |
| CDY70751 | Canola | cytosol | 66.3 | 71.26 |
| Bra036568.1-P | Field mustard | cytosol | 66.67 | 70.82 |
| CDY19781 | Canola | cytosol | 66.67 | 70.82 |
| CDY52629 | Canola | nucleus | 67.4 | 70.5 |
| CDX87061 | Canola | cytosol | 66.3 | 70.43 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 66.3 | 70.43 |
| Bra009887.1-P | Field mustard | nucleus | 67.03 | 70.11 |
| CDX88221 | Canola | nucleus | 67.03 | 70.11 |
| CDY16540 | Canola | cytosol | 67.03 | 69.85 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 63.74 | 69.6 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 64.47 | 69.29 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 64.47 | 69.29 |
| AT5G20510.1 | Thale cress | cytosol | 65.93 | 69.23 |
| AT3G42790.1 | Thale cress | nucleus | 63.37 | 69.2 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 64.1 | 68.9 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 61.9 | 66.54 |
| Bra034950.1-P | Field mustard | nucleus | 61.9 | 66.54 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 63.74 | 66.16 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 61.54 | 66.14 |
| Bra002307.1-P | Field mustard | nucleus | 66.67 | 64.54 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 59.71 | 61.98 |
| Zm00001d022110_P002 | Maize | nucleus | 71.43 | 61.9 |
| GSMUA_Achr10P... | Banana | nucleus | 55.31 | 59.92 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 21.25 | 57.43 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 53.85 | 57.2 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 51.28 | 55.78 |
| KRH61563 | Soybean | cytosol | 42.86 | 53.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.28 | 46.36 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 42.86 | 41.34 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 26.74 | 33.33 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 26.74 | 33.33 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF65 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS2B01G198500 |
| EnsemblPlants:TraesCS2B01G198500.2 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd15613 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:176167985..176172676
Molecular Weight (calculated)
30162.1 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.862
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAQYNPRTV EEVFRDYKGR RNGLARALTT DVEEFFRQCD PEKENLCLYG FPNEHWEVNL PAEEVPPELP EPALGINFAR DGMQEKDWLS MVAVHSDAWL
101: LSVAFYFGAR FGFDKSDRKR LFGMINELPT IFDVVSGKSK TKAPTNNNHS NSKSKSNNKM QKTSEPRAKQ PKPQLKEEDH EDEAPDAGED GGGAAGGGGG
201: GEEHGDTLCG ACGDNYGQDE FWIGCDMCEK WFHGKCVKIT PAKAEHIKQY KCPSCMGANG GGSGSNKRAR PSS
101: LSVAFYFGAR FGFDKSDRKR LFGMINELPT IFDVVSGKSK TKAPTNNNHS NSKSKSNNKM QKTSEPRAKQ PKPQLKEEDH EDEAPDAGED GGGAAGGGGG
201: GEEHGDTLCG ACGDNYGQDE FWIGCDMCEK WFHGKCVKIT PAKAEHIKQY KCPSCMGANG GGSGSNKRAR PSS
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.