Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19253 | Soybean | nucleus | 90.87 | 91.24 |
| VIT_09s0002g01600.t01 | Wine grape | nucleus | 93.65 | 90.42 |
| KRH37475 | Soybean | nucleus | 88.1 | 89.52 |
| KRH02655 | Soybean | nucleus | 89.29 | 89.29 |
| VIT_04s0008g01670.t01 | Wine grape | nucleus | 93.25 | 89.02 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 35.32 | 88.12 |
| Bra006562.1-P | Field mustard | cytosol | 24.21 | 87.14 |
| CDY51845 | Canola | cytosol | 24.21 | 87.14 |
| AT5G26210.1 | Thale cress | nucleus | 84.13 | 83.14 |
| Bra036568.1-P | Field mustard | cytosol | 82.94 | 81.32 |
| CDX87061 | Canola | cytosol | 82.94 | 81.32 |
| CDY19781 | Canola | cytosol | 82.94 | 81.32 |
| CDY52629 | Canola | nucleus | 84.13 | 81.23 |
| CDX88221 | Canola | nucleus | 83.73 | 80.84 |
| Bra009887.1-P | Field mustard | nucleus | 83.73 | 80.84 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 79.76 | 80.4 |
| Bra020107.1-P | Field mustard | cytosol | 80.16 | 79.53 |
| CDY70751 | Canola | cytosol | 80.16 | 79.53 |
| AT3G42790.1 | Thale cress | nucleus | 77.38 | 78.0 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 78.57 | 77.95 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 78.57 | 77.95 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 78.97 | 77.43 |
| CDY16540 | Canola | cytosol | 80.16 | 77.1 |
| AT5G20510.1 | Thale cress | cytosol | 78.97 | 76.54 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 75.79 | 75.2 |
| Bra034950.1-P | Field mustard | nucleus | 75.79 | 75.2 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 75.0 | 74.7 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 75.0 | 74.41 |
| Os07t0608400-01 | Rice | nucleus | 80.56 | 73.02 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 77.78 | 71.79 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 77.78 | 71.79 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 77.78 | 71.79 |
| Bra002307.1-P | Field mustard | nucleus | 80.16 | 71.63 |
| EER97523 | Sorghum | nucleus | 72.22 | 67.66 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 65.08 | 67.49 |
| GSMUA_Achr10P... | Banana | nucleus | 65.08 | 65.08 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 61.51 | 64.32 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 76.59 | 63.7 |
| Zm00001d022110_P002 | Maize | nucleus | 71.83 | 57.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.32 | 50.33 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.76 | 34.25 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.76 | 34.25 |
Protein Annotations
| EntrezGene:100852794 | wikigene:100852794 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | ProteinID:CBI27844 |
| ProteinID:CBI27844.3 | UniProt:D7TCI6 | EMBL:FN595756 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | EntrezGene:LOC100852794 | wikigene:LOC100852794 |
| PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 |
| SMART:SM00249 | SUPFAM:SSF57903 | TIGR:TC60293 | UniParc:UPI00015C851B | ArrayExpress:VIT_11s0016g01500 | EnsemblPlantsGene:VIT_11s0016g01500 |
| EnsemblPlants:VIT_11s0016g01500.t01 | unigene:Vvi.12171 | unigene:Vvi.5438 | RefSeq:XP_003633111 | RefSeq:XP_003633111.1 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
No Description!
Coordinates
chr11:+:1192377..1198670
Molecular Weight (calculated)
28489.4 Da
IEP (calculated)
5.009
GRAVY (calculated)
-0.674
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGPQYNPR TVEEVFRDFK GRRAGMIKAL TTDVEEFYQQ CDPEKENLCL YGFPNELWEV NLPAEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDA
101: WLLAVAFYFG ARFGFDKADR KRLFNMINDL PTIFEVVTGA AKKQVKEKSS VSNHSSNKSK SNSKVRGSES AKYLKGGQPK DEEEGLDEVD EEEHGDTLCG
201: ACGENYASDE FWICCDICEK WFHGKCVKIT PARAEHIKQY KCPSCSNKRA RP
101: WLLAVAFYFG ARFGFDKADR KRLFNMINDL PTIFEVVTGA AKKQVKEKSS VSNHSSNKSK SNSKVRGSES AKYLKGGQPK DEEEGLDEVD EEEHGDTLCG
201: ACGENYASDE FWICCDICEK WFHGKCVKIT PARAEHIKQY KCPSCSNKRA RP
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.