Factsheet for VIT_13s0067g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0105g00360.t01	Wine grape	nucleus	80.5	79.84
GSMUA_Achr7P15530_001	Banana	nucleus	78.01	77.69
GSMUA_Achr10P...	Banana	nucleus	76.76	76.45
GSMUA_Achr2P18960_001	Banana	nucleus	75.52	75.21
Os07t0233300-01	Rice	nucleus	72.61	71.72
Os03t0818300-01	Rice	nucleus	72.61	70.85
HORVU2Hr1G052960.2	Barley	cytosol	71.37	69.92
OQU88744	Sorghum	cytosol	69.71	69.42
Zm00001d005185_P001	Maize	nucleus	68.05	68.05
EES00286	Sorghum	nucleus	67.22	66.94
OQU77499	Sorghum	nucleus	70.12	66.8
Zm00001d034627_P002	Maize	nucleus	68.88	66.4
Zm00001d010834_P001	Maize	nucleus	69.29	66.01
EER90633	Sorghum	nucleus	68.46	66.0
TraesCS5D01G486400.2	Wheat	nucleus	67.22	64.54
TraesCS5B01G486600.1	Wheat	nucleus	67.22	64.54
TraesCS1B01G129400.1	Wheat	nucleus	67.63	63.42
TraesCS1D01G111700.1	Wheat	nucleus	67.63	63.42
TraesCS1A01G110200.1	Wheat	nucleus	67.63	63.42
Zm00001d037537_P001	Maize	nucleus	65.98	61.63
VIT_11s0016g01500.t01	Wine grape	nucleus	64.32	61.51
VIT_09s0002g01600.t01	Wine grape	nucleus	66.39	61.3
VIT_12s0035g01980.t01	Wine grape	nucleus	62.24	59.29
VIT_04s0008g01670.t01	Wine grape	nucleus	64.73	59.09
HORVU5Hr1G112420.6	Barley	nucleus	61.41	53.82
OQU88643	Sorghum	extracellular, golgi, mitochondrion	26.97	53.72
VIT_11s0016g01630.t01	Wine grape	plastid	21.16	50.49
HORVU1Hr1G024210.1	Barley	nucleus	67.63	48.08
Os05t0163100-01	Rice	nucleus	43.57	39.47
HORVU5Hr1G059130.2	Barley	nucleus	22.82	36.67
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	31.95	35.16
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	31.95	35.16

Protein Annotations

EntrezGene:100251933	wikigene:100251933	MapMan:15.5.8	Gene3D:3.30.40.10	UniProt:A5BFH5	EMBL:AM457688
InterPro:Alfin	ProteinID:CAN72300	ProteinID:CAN72300.1	ProteinID:CBI25471	ProteinID:CBI25471.3	EMBL:FN595514
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EntrezGene:LOC100251933	wikigene:LOC100251933
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96
SMART:SM00249	SUPFAM:SSF57903	TIGR:TC53420	TMHMM:TMhelix	UniParc:UPI0001520C40	ArrayExpress:VIT_13s0067g01000
EnsemblPlantsGene:VIT_13s0067g01000	EnsemblPlants:VIT_13s0067g01000.t01	RefSeq:XP_002270490	RefSeq:XP_002270490.2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:571436..576340

Molecular Weight (calculated)

27098.9 Da

IEP (calculated)

5.709

GRAVY (calculated)

-0.557

Length

241 amino acids

Sequence
(BLAST)

001: MASIDSSPRT VEDIFKDYKA RRSGVVQALT FDVDEFYALC DPEKENLCLY GHPNGSWHVA MPAEEVPPEL PEPALGINFA RDGMNRRDWL ALVAVHSDSW
101: LLSVAFYFGA SLNRNDRKRL FSMINDLPTV FEAVTQGKLV KDKPTMDSGS KSKSSTKRSI DGQVRNDLRP RDEGYVEDDD EHSETLCGSC GGNYNADEFW
201: IGCDICERWF HGKCVKITPA KAESIKQYKC PSCSLKKGRL N

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.