CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05274
EES08261
EES18243
KXG26388
KXG33847
OQU78932

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	EES05274	AT1G14510.1	21798944
AT3G11200.1	EES08261	AT1G14510.1	21798944
AT3G11200.1	EES18243	AT1G14510.1	21798944
AT3G11200.1	KXG26388	AT1G14510.1	21798944
AT3G11200.1	KXG33847	AT1G14510.1	21798944
AT3G11200.1	OQU78932	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010834_P001	Maize	nucleus	94.47	94.47
Zm00001d037537_P001	Maize	nucleus	91.3	89.53
TraesCS1D01G111700.1	Wheat	nucleus	85.38	84.05
TraesCS1B01G129400.1	Wheat	nucleus	85.38	84.05
TraesCS1A01G110200.1	Wheat	nucleus	85.38	84.05
EES00286	Sorghum	nucleus	76.68	80.17
GSMUA_Achr7P15530_001	Banana	nucleus	68.77	71.9
GSMUA_Achr2P18960_001	Banana	nucleus	67.98	71.07
GSMUA_Achr10P...	Banana	nucleus	67.98	71.07
Solyc09g005360.2.1	Tomato	nucleus	66.8	70.12
VIT_13s0067g01000.t01	Wine grape	nucleus	66.8	70.12
KRH00242	Soybean	nucleus	66.01	69.87
KRH38049	Soybean	nucleus	65.61	69.75
PGSC0003DMT400059399	Potato	nucleus	66.4	69.71
KRH49390	Soybean	nucleus	65.61	69.46
KRH65724	Soybean	nucleus	65.22	69.04
Solyc10g076690.1.1	Tomato	nucleus	63.24	66.67
VIT_08s0105g00360.t01	Wine grape	nucleus	63.64	66.26
PGSC0003DMT400049364	Potato	nucleus	62.85	66.25
Solyc10g085180.1.1	Tomato	nucleus	61.66	65.0
PGSC0003DMT400028638	Potato	nucleus	61.66	65.0
HORVU1Hr1G024210.1	Barley	nucleus	85.77	64.01
CDX73886	Canola	nucleus	61.66	63.67
CDY00726	Canola	nucleus	61.26	63.27
AT5G05610.1	Thale cress	nucleus	60.08	63.07
AT3G11200.1	Thale cress	nucleus	60.87	62.6
Bra034860.1-P	Field mustard	nucleus	60.87	62.35
CDY08544	Canola	nucleus	60.87	62.35
KRH56367	Soybean	peroxisome	53.75	61.82
Bra034169.1-P	Field mustard	nucleus	60.87	61.6
CDY01002	Canola	nucleus	60.47	61.2
CDY36305	Canola	cytosol	60.47	61.2
Solyc06g051420.2.1	Tomato	nucleus	58.5	60.41
CDX70142	Canola	cytosol	56.92	60.0
OQU88744	Sorghum	cytosol	57.31	59.92
Bra009121.1-P	Field mustard	nucleus	56.52	59.58
KRH69940	Soybean	peroxisome	51.78	59.55
EER90633	Sorghum	nucleus	58.5	59.2
Bra001393.1-P	Field mustard	nucleus	57.71	58.4
CDX98851	Canola	nucleus	54.94	57.92
KXG33847	Sorghum	nucleus	58.5	57.81
KXG26388	Sorghum	cytosol	55.73	56.4
EES08261	Sorghum	nucleus	56.13	55.91
EES18243	Sorghum	nucleus	56.52	55.64
EES05274	Sorghum	nucleus	56.13	55.47
OQU78932	Sorghum	nucleus	56.52	55.21
EER97523	Sorghum	nucleus	56.52	53.16
OQU88643	Sorghum	extracellular, golgi, mitochondrion	24.9	52.07
Os05t0163100-01	Rice	nucleus	52.17	49.62
CDY36322	Canola	cytosol, plasma membrane, plastid	54.55	47.92
OQU77873	Sorghum	cytosol	35.97	36.55
OQU77872	Sorghum	cytosol, mitochondrion, nucleus, plastid	28.46	32.14
KXG21847	Sorghum	cytosol, plastid	33.99	29.66
OQU77871	Sorghum	cytosol	13.04	28.95
KXG24231	Sorghum	cytosol, mitochondrion, nucleus, plastid	28.85	27.04

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EntrezGene:8071208	UniProt:A0A1Z5R1T2	InterPro:Alfin	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0042393
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:OQU77499	ProteinID:OQU77499	ProteinID:OQU77499.1
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF37
SMART:SM00249	EnsemblPlantsGene:SORBI_3009G056300	SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI0001A88D64	RefSeq:XP_002440661.1
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

hypothetical protein

Coordinates

chr9:-:5724789..5729516

Molecular Weight (calculated)

28441.1 Da

IEP (calculated)

5.251

GRAVY (calculated)

-0.684

Length

253 amino acids

Sequence
(BLAST)

001: MDASYRRAGA GSGSAPRSVD DIYKDYRARR SAILRALTHD VEEFYALCDP EKENLCLYGY ANEAWEVALP AEEVPTELPE PALGINFARD GMNRRDWLAL
101: VAVHSDSWLV SVAFYYAARL NRNDRKRLFS MMNDLPTVFE VVSGGVKQSK ERDRSSTDNG GRNKLSAKQT SEPPLENNVR EPDEGYDEDD GNHSETLCGT
201: CGGIYSADEF WIGCDVCEKW YHGKCVKITP TKAESIKQYK CPSCCNSKRP RPL

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.