Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028638 | Potato | nucleus | 94.17 | 94.17 |
| Solyc09g005360.2.1 | Tomato | nucleus | 82.92 | 82.57 |
| Solyc10g076690.1.1 | Tomato | nucleus | 79.58 | 79.58 |
| GSMUA_Achr10P... | Banana | nucleus | 72.5 | 71.9 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 72.08 | 71.49 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 71.67 | 71.07 |
| Os07t0233300-01 | Rice | nucleus | 70.83 | 69.67 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 67.08 | 65.45 |
| Solyc06g051420.2.1 | Tomato | nucleus | 66.25 | 64.9 |
| OQU88744 | Sorghum | cytosol | 64.58 | 64.05 |
| Zm00001d005185_P001 | Maize | nucleus | 63.75 | 63.49 |
| Os03t0818300-01 | Rice | nucleus | 65.0 | 63.16 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 65.83 | 62.95 |
| Solyc01g102760.2.1 | Tomato | nucleus | 65.0 | 62.9 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 65.42 | 62.55 |
| EER90633 | Sorghum | nucleus | 65.0 | 62.4 |
| OQU77499 | Sorghum | nucleus | 65.0 | 61.66 |
| Zm00001d010834_P001 | Maize | nucleus | 65.0 | 61.66 |
| Zm00001d034627_P002 | Maize | nucleus | 64.17 | 61.6 |
| EES00286 | Sorghum | nucleus | 62.08 | 61.57 |
| Solyc01g102750.2.1 | Tomato | nucleus | 62.92 | 60.64 |
| Solyc12g096040.1.1 | Tomato | nucleus | 63.33 | 59.84 |
| Solyc07g041190.2.1 | Tomato | nucleus | 61.25 | 59.76 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 63.75 | 59.53 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 63.75 | 59.53 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 63.75 | 59.53 |
| Solyc06g062850.2.1 | Tomato | nucleus | 63.33 | 59.14 |
| Solyc05g032770.2.1 | Tomato | nucleus | 41.67 | 58.14 |
| Zm00001d037537_P001 | Maize | nucleus | 61.25 | 56.98 |
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 22.08 | 54.64 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 27.08 | 53.72 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 60.42 | 52.73 |
| Solyc03g121930.2.1 | Tomato | nucleus | 53.75 | 46.74 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 63.75 | 45.13 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 22.08 | 35.33 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 31.67 | 34.7 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 31.67 | 34.7 |
| Os05t0163100-01 | Rice | nucleus | 38.33 | 34.59 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4D3V2 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc10g085180.1 | EnsemblPlants:Solyc10g085180.1.1 | UniParc:UPI000276A716 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr10:+:64450607..64455570
Molecular Weight (calculated)
27178.0 Da
IEP (calculated)
5.411
GRAVY (calculated)
-0.586
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISSTPRT VEEIFKDYSA RRAGILRALT YDVEEFSHMC DPEKENLCLY GHPNETWEVN LPADEVPPEL PEPALGINFA RDGMNRIDWL SLVAVHSDCW
101: LLSVAYFFGA RLNKNERKRL HSLINDLPTV FEVIAERRPI KDKPSAENGS KSRGSIQRTS DVQSKSTAKL ADESCDEDEE EHGETLCGCC DGHYNADEFW
201: IGCDICEKWF HGKCVKITPA KAEGIKQYKC PACNLKRHRP
101: LLSVAYFFGA RLNKNERKRL HSLINDLPTV FEVIAERRPI KDKPSAENGS KSRGSIQRTS DVQSKSTAKL ADESCDEDEE EHGETLCGCC DGHYNADEFW
201: IGCDICEKWF HGKCVKITPA KAEGIKQYKC PACNLKRHRP
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.