Factsheet for Os03t0818300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0887700-01
Os02t0564100-01
Os04t0444900-01
Os05t0419100-01
Os11t0244800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	Os01t0887700-01	AT1G14510.1	21798944
AT3G11200.1	Os02t0564100-01	AT1G14510.1	21798944
AT3G11200.1	Os04t0444900-01	AT1G14510.1	21798944
AT3G11200.1	Os05t0419100-01	AT1G14510.1	21798944
AT3G11200.1	Os11t0244800-01	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0233300-01	Rice	nucleus	78.14	79.1
Zm00001d034627_P002	Maize	nucleus	78.95	78.0
EER90633	Sorghum	nucleus	78.14	77.2
TraesCS5D01G486400.2	Wheat	nucleus	76.92	75.7
TraesCS5B01G486600.1	Wheat	nucleus	76.52	75.3
VIT_13s0067g01000.t01	Wine grape	nucleus	70.85	72.61
KRH65724	Soybean	nucleus	70.04	72.38
GSMUA_Achr10P...	Banana	nucleus	70.85	72.31
KRH38049	Soybean	nucleus	69.64	72.27
KRH49390	Soybean	nucleus	69.64	71.97
KRH00242	Soybean	nucleus	69.23	71.55
GSMUA_Achr7P15530_001	Banana	nucleus	68.83	70.25
VIT_08s0105g00360.t01	Wine grape	nucleus	68.83	69.96
PGSC0003DMT400049364	Potato	nucleus	67.21	69.17
Solyc10g076690.1.1	Tomato	nucleus	67.21	69.17
GSMUA_Achr2P18960_001	Banana	nucleus	67.21	68.59
PGSC0003DMT400059399	Potato	nucleus	65.99	67.63
Solyc09g005360.2.1	Tomato	nucleus	65.59	67.22
KRH56367	Soybean	peroxisome	58.3	65.45
PGSC0003DMT400028638	Potato	nucleus	63.56	65.42
CDX73886	Canola	nucleus	64.78	65.31
AT3G11200.1	Thale cress	nucleus	64.78	65.04
Solyc10g085180.1.1	Tomato	nucleus	63.16	65.0
CDY00726	Canola	nucleus	63.97	64.49
AT5G05610.1	Thale cress	nucleus	62.75	64.32
Bra034169.1-P	Field mustard	nucleus	63.97	63.2
KRH69940	Soybean	peroxisome	56.28	63.18
HORVU5Hr1G112420.6	Barley	nucleus	70.04	62.91
CDY36305	Canola	cytosol	63.56	62.8
CDY08544	Canola	nucleus	62.75	62.75
Bra034860.1-P	Field mustard	nucleus	62.75	62.75
CDY01002	Canola	nucleus	63.16	62.4
Solyc06g051420.2.1	Tomato	nucleus	61.13	61.63
CDX70142	Canola	cytosol	58.7	60.42
Bra009121.1-P	Field mustard	nucleus	58.3	60.0
CDX98851	Canola	nucleus	58.3	60.0
Bra001393.1-P	Field mustard	nucleus	59.92	59.2
Os11t0244800-01	Rice	nucleus	57.49	55.91
Os04t0444900-01	Rice	nucleus	54.66	52.73
Os05t0419100-01	Rice	nucleus	55.06	52.71
Os07t0608400-01	Rice	nucleus	59.11	52.52
Os02t0564100-01	Rice	nucleus	55.47	51.31
CDY36322	Canola	cytosol, plasma membrane, plastid	59.11	50.69
Os01t0887700-01	Rice	nucleus	53.85	48.9
HORVU5Hr1G059130.2	Barley	nucleus	25.91	42.67
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	34.01	38.36
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	34.01	38.36
Os05t0163100-01	Rice	nucleus	37.65	34.96
Os01t0158800-00	Rice	plastid	27.53	28.57

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EntrezGene:4334579	ProteinID:AAO60037.1	ProteinID:AAO65855.1	ProteinID:ABF99565.1
EMBL:AK103363	InterPro:Alfin	ProteinID:BAF13621.1	ProteinID:BAS87067.1	ProteinID:EEE60182.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	EnsemblPlantsGene:Os03g0818300	EnsemblPlants:Os03t0818300-01	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF37	UniProt:Q84TV4	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI0000002C9D	RefSeq:XP_015629849.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0818300-01)

Coordinates

chr3:-:34343147..34346735

Molecular Weight (calculated)

27783.6 Da

IEP (calculated)

5.921

GRAVY (calculated)

-0.533

Length

247 amino acids

Sequence
(BLAST)

001: MEMAPAAQVA SNPRTVEDIF KDYSARRGAL VRALTSDVDE FFGLCDPDKE NLCLYGLANG SWEVALPAEE VPPELPEPAL GINFARDGMN RRDWLSLVAV
101: HSDSWLVSVA FFFAARLNGN ERKRLFNMIN DLPTVYEALV DRKHVRDRSG VDSSGKSKHS TKRTGEGQVK RSRVVAEEYE DDDEEHNETF CGTCGGLYNA
201: NEFWIGCDIC ERWFHGKCVR ITPAKAEHIK HYKCPDCSSS SSKKTRL

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.