Factsheet for Solyc06g051420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102750.2.1
Solyc01g102760.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	Solyc01g102750.2.1	AT1G14510.1	21798944
AT3G11200.1	Solyc01g102760.2.1	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0105g00360.t01	Wine grape	nucleus	71.84	72.43
KRH49390	Soybean	nucleus	70.2	71.97
KRH00242	Soybean	nucleus	70.2	71.97
CDX73886	Canola	nucleus	71.84	71.84
CDY00726	Canola	nucleus	71.43	71.43
Solyc09g005360.2.1	Tomato	nucleus	70.2	71.37
KRH38049	Soybean	nucleus	68.57	70.59
CDY36305	Canola	cytosol	71.84	70.4
AT3G11200.1	Thale cress	nucleus	70.61	70.33
KRH65724	Soybean	nucleus	68.57	70.29
AT5G05610.1	Thale cress	nucleus	68.98	70.12
Bra034169.1-P	Field mustard	nucleus	71.02	69.6
CDY01002	Canola	nucleus	70.2	68.8
CDY08544	Canola	nucleus	68.98	68.42
Bra034860.1-P	Field mustard	nucleus	68.98	68.42
CDX70142	Canola	cytosol	65.31	66.67
Solyc10g076690.1.1	Tomato	nucleus	64.9	66.25
Solyc10g085180.1.1	Tomato	nucleus	64.9	66.25
Bra009121.1-P	Field mustard	nucleus	64.9	66.25
GSMUA_Achr10P...	Banana	nucleus	65.31	66.12
GSMUA_Achr7P15530_001	Banana	nucleus	65.31	66.12
GSMUA_Achr2P18960_001	Banana	nucleus	64.49	65.29
CDX98851	Canola	nucleus	63.27	64.58
KRH56367	Soybean	peroxisome	57.96	64.55
Bra001393.1-P	Field mustard	nucleus	65.31	64.0
Os07t0233300-01	Rice	nucleus	63.27	63.52
KRH69940	Soybean	peroxisome	56.73	63.18
HORVU2Hr1G052960.2	Barley	cytosol	63.27	63.01
EES00286	Sorghum	nucleus	60.82	61.57
Solyc01g102750.2.1	Tomato	nucleus	62.45	61.45
Os03t0818300-01	Rice	nucleus	61.63	61.13
Solyc01g102760.2.1	Tomato	nucleus	61.22	60.48
Solyc06g062850.2.1	Tomato	nucleus	62.86	59.92
Solyc12g096040.1.1	Tomato	nucleus	62.04	59.84
Zm00001d034627_P002	Maize	nucleus	60.82	59.6
Solyc07g041190.2.1	Tomato	nucleus	59.59	59.35
Solyc05g032770.2.1	Tomato	nucleus	41.22	58.72
OQU88744	Sorghum	cytosol	57.96	58.68
Zm00001d005185_P001	Maize	nucleus	57.55	58.51
OQU77499	Sorghum	nucleus	60.41	58.5
EER90633	Sorghum	nucleus	59.59	58.4
TraesCS5B01G486600.1	Wheat	nucleus	59.18	57.77
Zm00001d010834_P001	Maize	nucleus	59.59	57.71
TraesCS5D01G486400.2	Wheat	nucleus	58.37	56.97
TraesCS1A01G110200.1	Wheat	nucleus	58.78	56.03
TraesCS1B01G129400.1	Wheat	nucleus	58.78	56.03
TraesCS1D01G111700.1	Wheat	nucleus	58.78	56.03
CDY36322	Canola	cytosol, plasma membrane, plastid	65.31	55.56
Zm00001d037537_P001	Maize	nucleus	57.96	55.04
Solyc05g032760.2.1	Tomato	extracellular, nucleus	20.0	50.52
OQU88643	Sorghum	extracellular, golgi, mitochondrion	24.49	49.59
HORVU5Hr1G112420.6	Barley	nucleus	54.29	48.36
Solyc03g121930.2.1	Tomato	nucleus	51.84	46.01
HORVU1Hr1G024210.1	Barley	nucleus	58.78	42.48
Os05t0163100-01	Rice	nucleus	34.69	31.95
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.16	31.51
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.16	31.51
HORVU5Hr1G059130.2	Barley	nucleus	18.37	30.0

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:K4C5T5
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96
SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc06g051420.2	EnsemblPlants:Solyc06g051420.2.1	UniParc:UPI0001CACA65	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:34787566..34800288

Molecular Weight (calculated)

27848.4 Da

IEP (calculated)

5.117

GRAVY (calculated)

-0.802

Length

245 amino acids

Sequence
(BLAST)

001: MATNSSSHSP RTVEEIFKDF SARHAAVLRA LTTDVEDFYS QCDPERDNLC LYGHPNESWE VAVPAEEVPP ELPEPVLGIN FARDGMERRD WLSLVAMHTD
101: SWLLSVAFYF GARLNRNERS RVFTLINDLP TVFEAVTGRK PLKDKPSVDS GKKSKNNAKR EKQMKANQRL QEESDDEDEG NEDEHEETLC GSCGTNGNED
201: EFWIGCDICE KWYHGKCVKI TPAKAQSIKE YRCPSCSNKR AKHMA

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.