Factsheet for Solyc01g102760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g006060.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02470.1	Solyc07g006060.2.1	AT4G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102750.2.1	Tomato	nucleus	92.74	92.37
CDY17594	Canola	cytosol	41.53	87.29
KRH01887	Soybean	nucleus	86.29	84.92
KRH51269	Soybean	nucleus	85.89	84.86
VIT_12s0035g01980.t01	Wine grape	nucleus	85.48	83.79
GSMUA_AchrUn_...	Banana	cytosol	38.71	79.34
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	77.82	79.1
CDY04130	Canola	cytosol, nucleus, plastid	77.82	79.1
CDY17436	Canola	cytosol, nucleus, plastid	77.82	79.1
AT1G14510.1	Thale cress	nucleus	79.84	78.57
Bra024817.1-P	Field mustard	nucleus	77.82	78.46
CDY03049	Canola	cytosol	77.02	77.96
AT2G02470.1	Thale cress	cytosol, nucleus, plastid	79.44	76.95
CDX84026	Canola	nucleus	77.42	76.8
Bra016698.1-P	Field mustard	cytosol	76.61	76.0
CDX96851	Canola	cytosol	76.61	76.0
CDY53545	Canola	cytosol	73.79	75.31
CDX81645	Canola	cytosol	73.79	75.31
EES08261	Sorghum	nucleus	77.02	75.2
Bra026825.1-P	Field mustard	nucleus	73.39	74.59
Os11t0244800-01	Rice	nucleus	75.81	74.02
TraesCS4B01G088200.1	Wheat	nucleus	75.4	73.62
Solyc05g032770.2.1	Tomato	nucleus	50.81	73.26
TraesCS4D01G085300.1	Wheat	peroxisome	75.0	73.23
Solyc12g096040.1.1	Tomato	nucleus	75.0	73.23
TraesCS4A01G227900.1	Wheat	peroxisome	75.0	73.23
GSMUA_Achr7P02940_001	Banana	nucleus	74.6	73.12
CDY17593	Canola	cytosol	34.68	72.88
GSMUA_Achr10P...	Banana	nucleus	74.6	72.83
HORVU4Hr1G015060.3	Barley	nucleus	74.6	72.83
Solyc07g041190.2.1	Tomato	nucleus	72.18	72.76
GSMUA_Achr3P16750_001	Banana	nucleus	73.79	72.33
GSMUA_Achr8P32300_001	Banana	nucleus	74.6	72.27
Zm00001d010241_P002	Maize	cytosol	47.18	72.22
GSMUA_Achr2P05660_001	Banana	nucleus	73.39	71.94
GSMUA_Achr11P...	Banana	nucleus	72.58	71.43
GSMUA_Achr6P28820_001	Banana	nucleus	71.77	70.36
EES18243	Sorghum	nucleus	72.58	70.04
Solyc06g062850.2.1	Tomato	nucleus	72.58	70.04
Zm00001d038208_P001	Maize	nucleus	72.18	69.92
EES05274	Sorghum	nucleus	71.37	69.14
Os05t0419100-01	Rice	nucleus	71.77	68.99
TraesCS1A01G262200.1	Wheat	peroxisome	60.08	68.04
Solyc09g005360.2.1	Tomato	nucleus	65.73	67.63
HORVU1Hr1G064250.4	Barley	mitochondrion, nucleus, peroxisome	71.77	67.42
OQU78932	Sorghum	nucleus	70.16	67.18
TraesCS1D01G262200.1	Wheat	peroxisome	70.97	67.18
Solyc10g076690.1.1	Tomato	nucleus	64.92	67.08
TraesCS1B01G272800.3	Wheat	peroxisome	70.97	66.92
KXG33847	Sorghum	nucleus	68.95	66.8
TraesCS3D01G398800.2	Wheat	cytosol	70.16	66.16
Solyc05g032760.2.1	Tomato	extracellular, nucleus	25.81	65.98
TraesCS3B01G437100.1	Wheat	cytosol	69.76	65.78
TraesCS3A01G403600.1	Wheat	cytosol	69.76	65.78
Zm00001d042582_P001	Maize	cytosol, mitochondrion, nucleus	67.74	65.37
Solyc10g085180.1.1	Tomato	nucleus	62.9	65.0
Zm00001d041767_P002	Maize	nucleus	69.35	64.91
Os02t0564100-01	Rice	nucleus	69.76	64.79
Os01t0887700-01	Rice	nucleus	70.56	64.34
Os04t0444900-01	Rice	nucleus	66.13	64.06
GSMUA_AchrUn_...	Banana	plastid	33.06	64.06
KXG26388	Sorghum	cytosol	62.9	62.4
Zm00001d050816_P002	Maize	cytosol, endoplasmic reticulum, nucleus	71.77	62.02
Zm00001d016861_P003	Maize	cytosol, nucleus, plastid	70.16	61.7
Solyc06g051420.2.1	Tomato	nucleus	60.48	61.22
Zm00001d012196_P005	Maize	nucleus	68.15	58.88
Zm00001d023962_P001	Maize	nucleus	69.35	55.84
Solyc03g121930.2.1	Tomato	nucleus	60.89	54.71
Zm00001d025504_P001	Maize	nucleus	50.81	50.81
HORVU3Hr1G090540.1	Barley	nucleus	69.76	49.43
GSMUA_Achr10P...	Banana	nucleus	44.35	42.31
TraesCS2A01G312700.1	Wheat	nucleus	46.37	40.64
TraesCS2D01G311200.1	Wheat	nucleus	45.56	39.93
TraesCS2B01G329700.1	Wheat	nucleus	45.56	39.93
Zm00001d025491_P002	Maize	nucleus	54.03	36.81
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.03	32.88
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	29.03	32.88
HORVU2Hr1G077670.3	Barley	nucleus	45.56	31.83

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	UniProt:C9EID2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	EMBL:GQ848314	InterPro:IPR013083	InterPro:IPR019787
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF60
SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc01g102760.2	EnsemblPlants:Solyc01g102760.2.1	UniParc:UPI0001B82A92	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative alfin-like transcription factor [Source:UniProtKB/TrEMBL;Acc:C9EID2]

Coordinates

chr1:+:91491223..91497288

Molecular Weight (calculated)

27950.7 Da

IEP (calculated)

4.692

GRAVY (calculated)

-0.669

Length

248 amino acids

Sequence
(BLAST)

001: MENTVPRTVE EVFNDFKGRR AGLIKALTTD VEKFYQSCDP EKENLCLYGL PNETWEVNLP VEEVPPELPE PALGINFARD GMQEKDWLSL VAVHSDSWLL
101: SVAFYFGARF GFGKSERKRL FQMTNDLPTV FEVVTGAAKQ ARDAAHNNSS KSKSSGKPRQ PEPQPKEVKV SPPTMEDESG EEEEEEEEEQ GATLCGACGD
201: NYATDEFWIC CDICERWFHG KCVKITPAKA EHIKQYKCPS CSSKRARV

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.