Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G272800.3 | Wheat | peroxisome | 100.0 | 99.62 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 81.68 | 97.72 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 96.18 | 95.45 |
| Zm00001d010241_P002 | Maize | cytosol | 56.11 | 90.74 |
| EES18243 | Sorghum | nucleus | 88.55 | 90.27 |
| Os05t0419100-01 | Rice | nucleus | 88.17 | 89.53 |
| Zm00001d038208_P001 | Maize | nucleus | 85.88 | 87.89 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 82.44 | 82.13 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 77.1 | 78.91 |
| CDY17594 | Canola | cytosol | 35.11 | 77.97 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 72.14 | 74.41 |
| KRH51269 | Soybean | nucleus | 68.7 | 71.71 |
| KRH01887 | Soybean | nucleus | 68.32 | 71.03 |
| Solyc01g102760.2.1 | Tomato | nucleus | 67.18 | 70.97 |
| PGSC0003DMT400047018 | Potato | nucleus | 66.41 | 70.16 |
| Solyc01g102750.2.1 | Tomato | nucleus | 66.41 | 69.88 |
| Bra024817.1-P | Field mustard | nucleus | 65.27 | 69.51 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 66.79 | 69.17 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 64.12 | 68.85 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 64.12 | 68.85 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 64.12 | 68.85 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 67.18 | 68.75 |
| CDY03049 | Canola | cytosol | 64.12 | 68.57 |
| AT1G14510.1 | Thale cress | nucleus | 63.74 | 66.27 |
| CDX81645 | Canola | cytosol | 61.45 | 66.26 |
| Bra026825.1-P | Field mustard | nucleus | 61.07 | 65.57 |
| CDY53545 | Canola | cytosol | 60.69 | 65.43 |
| CDY17593 | Canola | cytosol | 29.39 | 65.25 |
| CDX84026 | Canola | nucleus | 61.45 | 64.4 |
| Bra016698.1-P | Field mustard | cytosol | 61.07 | 64.0 |
| CDX96851 | Canola | cytosol | 61.07 | 64.0 |
| Bra026210.1-P | Field mustard | nucleus | 60.31 | 63.2 |
| CDY65375 | Canola | nucleus | 58.78 | 63.11 |
| CDY45267 | Canola | nucleus | 48.85 | 62.75 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 62.21 | 59.71 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 54.58 | 55.64 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 51.15 | 53.39 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 42.37 | 39.22 |
| TraesCS7D01G093700.1 | Wheat | plastid | 37.02 | 31.91 |
| TraesCS7D01G093600.1 | Wheat | plastid | 35.5 | 31.85 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS1D01G262200 |
| EnsemblPlants:TraesCS1D01G262200.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd15613 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:356136028..356142096
Molecular Weight (calculated)
29546.6 Da
IEP (calculated)
5.298
GRAVY (calculated)
-0.771
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAGAGAGA PYASRTAEEV FRDFRGRRAG MIKALTQEVD KFYQLCDPEK ENLCLYGYPN ETWEVTLPAE EVPPEIPEPA LGINFARDGM NEKDWLALVA
101: VHSDSWLLAV SFYFAARFGF DKEARRRLFN MINNLPTIFE VVTGAAKKQI KEKAPNSTHK SNNKPSMKTY SKPESQSKAP KIAAPPKDED ESGEDYGEEE
201: EEERDNTLCG TCGTNDGKDE FWICCDNCER WYHGKCVKIT PARAEHIKHY KCPDCSNKRA RA
101: VHSDSWLLAV SFYFAARFGF DKEARRRLFN MINNLPTIFE VVTGAAKKQI KEKAPNSTHK SNNKPSMKTY SKPESQSKAP KIAAPPKDED ESGEDYGEEE
201: EEERDNTLCG TCGTNDGKDE FWICCDNCER WYHGKCVKIT PARAEHIKHY KCPDCSNKRA RA
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.