Factsheet for TraesCS6B01G249100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G202600.1	Wheat	nucleus	98.26	96.07
TraesCS6A01G219600.1	Wheat	nucleus	95.98	93.35
Zm00001d051057_P002	Maize	nucleus	45.58	72.03
KXG30618	Sorghum	nucleus	53.49	67.97
Solyc07g006060.2.1	Tomato	nucleus	21.85	66.26
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	14.61	57.98
GSMUA_Achr7P16220_001	Banana	nucleus	37.27	55.6
VIT_11s0037g00880.t01	Wine grape	nucleus	34.85	52.63
CDY36467	Canola	nucleus	33.51	50.51
Bra010270.1-P	Field mustard	nucleus	33.24	50.2
CDY23260	Canola	nucleus	33.24	50.2
AT4G30860.1	Thale cress	nucleus	33.24	49.9
GSMUA_Achr6P30890_001	Banana	mitochondrion	34.05	47.3
KRH54981	Soybean	plastid	32.84	46.58
TraesCS7B01G354300.1	Wheat	nucleus	16.22	35.59
TraesCS5B01G177800.2	Wheat	nucleus	16.76	34.53
TraesCS2B01G317900.1	Wheat	nucleus	11.8	16.64
TraesCS3B01G161800.3	Wheat	plastid	12.87	9.65
TraesCS7B01G028500.2	Wheat	nucleus	9.92	9.23
TraesCS7B01G028200.2	Wheat	nucleus	10.46	8.79
TraesCS4B01G181400.3	Wheat	nucleus, plastid	10.46	8.76
TraesCS3B01G265800.1	Wheat	nucleus	12.06	8.75
TraesCS2B01G015500.1	Wheat	nucleus	18.1	7.52
TraesCS5B01G046300.1	Wheat	nucleus, plastid	12.33	7.1
TraesCS5B01G163000.1	Wheat	nucleus, plastid	10.32	7.09
TraesCS5B01G360200.1	Wheat	plastid	11.93	4.61

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	Gene3D:3.30.40.10	InterPro:AWS_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR001841
InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR013083	InterPro:IPR025787	PFAM:PF00856	ScanProsite:PS01359
PFscan:PS50089	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00249	SMART:SM00317	SMART:SM00508
SMART:SM00570	SUPFAM:SSF82199	EnsemblPlantsGene:TraesCS6B01G249100	EnsemblPlants:TraesCS6B01G249100.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:-:446839085..446849440

Molecular Weight (calculated)

80750.9 Da

IEP (calculated)

7.987

GRAVY (calculated)

-0.282

Length

746 amino acids

Sequence
(BLAST)

001: MPDLSTVCPE LSADAAVDLV GGDAAADPAT AAAAAATESS SGGDGAPIIP VECRWSGRVR AFDVQGAVPV TACPEARRGG ERRSSIVPLP SSAAASLAPL
101: SGWVLEDYVN EGVIAVTAGA EARRGGGRKN SSSAPLPPSA AAPAPASGRA LEEYVNADVA SLAASPEAHH GGGKDSSAPL HSAATAVHAP APGVKLEDYV
201: NVCAVSATPY LEARRSGGKK PDLMLEDYVN KGVVSITAHP EVRRGSGKRS SSTRSPLSPA ATVLALASGR SLKDYVKEWE ARKVASGASL QHCVLPFLTG
301: APKAVECRVC YKIIHPSEEI KCSVSRCEQM FHLTCVVEYT ANFTAESFRC PQHGCMVCKQ KMFFWRCGRC TVAAHTKCAP WPLIHLKDDQ GSAICWRHPS
401: NWLLQNENAD LTNNIEEVFC RLPLPYVNEE FNIDSTIRNF TAIVCKPPSY THIRRNVYLV KKKRADSSAE TGCTNCKSDS VCKDDCECRG LSMSCSKSCH
501: CSDLCSNKPF RKDKKIKIVK SEGCGWGAVA LEPLEKGDFI IEYVGEVIND ATCEQRLWDM KRRGDKNFYM CEISKDFTID ATFKGNTSRF LNHSCDPNCK
601: LEKWQVEGET RVGVFASRFI EVGEPLTYDY RFVHFGEKVK CHCGAKSCQG YLGSQLKNPT QNALAAAALE NKLLVQQGGC SPSRVKTETR LLPWTNCIEV
701: PFNLRSKTKI DRICWGQKRQ RTSLLDPSSS SASVQPSDIE AGAFIL

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.