Factsheet for VIT_11s0037g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30860.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006060.2.1	Tomato	nucleus	36.44	73.17
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	23.68	62.23
KRH54981	Soybean	plastid	63.97	60.08
AT4G30860.1	Thale cress	nucleus	60.32	59.96
CDY36467	Canola	nucleus	59.51	59.39
Bra010270.1-P	Field mustard	nucleus	59.31	59.31
CDY23260	Canola	nucleus	58.91	58.91
GSMUA_Achr7P16220_001	Banana	nucleus	58.5	57.8
HORVU3Hr1G083480.1	Barley	nucleus, peroxisome	27.13	56.54
OQU80550	Sorghum	nucleus	33.81	51.54
GSMUA_Achr6P30890_001	Banana	mitochondrion	55.06	50.65
Zm00001d051057_P002	Maize	nucleus	45.34	47.46
KXG30618	Sorghum	nucleus	49.39	41.57
TraesCS3D01G369900.1	Wheat	plastid	35.22	38.58
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	38.06	37.68
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	3.85	35.19
TraesCS6B01G249100.1	Wheat	nucleus	52.63	34.85
TraesCS6D01G202600.1	Wheat	nucleus	52.63	34.08
TraesCS6A01G219600.1	Wheat	nucleus	52.63	33.9
VIT_16s0039g00740.t01	Wine grape	mitochondrion	28.14	30.62
VIT_18s0072g00220.t01	Wine grape	nucleus	17.41	23.24
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	17.0	22.4
VIT_18s0072g00200.t01	Wine grape	nucleus	17.81	17.09
VIT_07s0031g00320.t01	Wine grape	nucleus	17.41	9.85
VIT_07s0005g01490.t01	Wine grape	nucleus	17.0	9.71
VIT_18s0001g01700.t01	Wine grape	nucleus	19.64	9.31
VIT_15s0046g00760.t01	Wine grape	nucleus	17.21	8.16
VIT_16s0098g00350.t01	Wine grape	nucleus	17.21	7.88
VIT_05s0124g00250.t01	Wine grape	nucleus	14.98	6.83
VIT_04s0008g06180.t01	Wine grape	nucleus	14.17	6.18
VIT_00s0429g00030.t01	Wine grape	nucleus	12.15	5.41
VIT_05s0049g02100.t01	Wine grape	cytosol	0.81	4.44

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100241513	wikigene:100241513	MapMan:12.3.3.4	Gene3D:2.170.270.10	Gene3D:3.30.40.10
InterPro:AWS_dom	ProteinID:CBI36587	ProteinID:CBI36587.3	UniProt:D7U1H1	EMBL:FN596499	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
GO:GO:0046872	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR013083
InterPro:IPR025787	EntrezGene:LOC100241513	wikigene:LOC100241513	PFAM:PF00856	ScanProsite:PS01359	PFscan:PS50280
PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00249	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI00015C960D	ArrayExpress:VIT_11s0037g00880	EnsemblPlantsGene:VIT_11s0037g00880	EnsemblPlants:VIT_11s0037g00880.t01	RefSeq:XP_002272781	RefSeq:XP_002272781.1
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:9538580..9561355

Molecular Weight (calculated)

56014.1 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.534

Length

494 amino acids

Sequence
(BLAST)

001: MPDLGNLLNS SSLTLSRCHN LKPLSDSCDS GGPLSPNSVN WEQRLRFPLS PKDEIECEKS GVGIRVLKRT RGGSLDRSKK LSNGKSLDDH VKAWADKKME
101: SGATKSQCSL PFMSGASRLD ECLVCHSFIY PGEEVSCTID GCQGVYHLKC AKNELGFSTK RKFKCPQHAC FVCKRRSYLQ CVRCIIASHQ KCAPWPEEMT
201: LLRNRSGQAV CWRHPTDWRL DKKHAAPTSD IEEIFSRLPL PYDEEEFKID LTWKDTVENK MEPTPYVHIR RNVYLVKKKR DDAADGIGCT NCSSVCSENC
301: VCRVQCISCS KSCHCSENCT NRPFRKEKKI KIVKTELCGW GVDAAESINK GDFVIEYIGE VIDDALCERR LWDMKDRGDQ NFYMCEIRKD FTIDATFKGN
401: ASRFLNHSCD PNCKLEKWQV EGETRVGVFA ARSIKAGEPL TYDYRFVRFG PEVKCHCGAP SCHGYLGTKK KIAKVELCWG SKRKRSSYFA LITI

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.