Factsheet for VIT_18s0072g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0072g00220.t01	Wine grape	nucleus	68.0	68.92
CDX67669	Canola	cytosol, nucleus, plastid	35.2	51.36
Solyc07g008580.1.1	Tomato	nucleus	37.07	50.0
PGSC0003DMT400059166	Potato	nucleus	40.0	49.34
VIT_18s0072g00200.t01	Wine grape	nucleus	66.93	48.74
CDX87571	Canola	nucleus	59.73	48.59
Bra015723.1-P	Field mustard	nucleus	59.47	48.37
CDX88310	Canola	nucleus	59.2	48.16
KRH35109	Soybean	nucleus	61.33	47.92
Solyc09g060000.1.1	Tomato	nucleus	33.07	47.15
KRG91687	Soybean	nucleus	62.13	46.98
Solyc07g008460.2.1	Tomato	nucleus	56.27	46.68
PGSC0003DMT400028500	Potato	nucleus	49.07	45.89
PGSC0003DMT400059198	Potato	nucleus	42.4	44.41
AT1G76710.3	Thale cress	nucleus	60.53	43.74
Solyc07g008500.1.1	Tomato	nucleus	32.27	42.01
Os04t0429100-01	Rice	nucleus	57.6	41.7
PGSC0003DMT400028514	Potato	nucleus	24.8	41.52
TraesCS2A01G302100.1	Wheat	nucleus	54.4	40.64
TraesCS2D01G300800.1	Wheat	nucleus	54.13	40.44
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	53.87	40.08
GSMUA_Achr10P...	Banana	nucleus	58.4	39.89
PGSC0003DMT400086207	Potato	nucleus	26.4	39.76
EES10812	Sorghum	nucleus	54.4	39.16
Zm00001d003679_P006	Maize	nucleus	53.07	38.79
TraesCS2B01G317900.1	Wheat	nucleus	54.67	38.75
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	5.33	37.04
VIT_16s0039g00740.t01	Wine grape	mitochondrion	25.33	20.93
VIT_11s0037g00880.t01	Wine grape	nucleus	22.4	17.0
VIT_18s0001g01700.t01	Wine grape	nucleus	30.93	11.13
VIT_07s0031g00320.t01	Wine grape	nucleus	16.27	6.99
VIT_05s0049g02100.t01	Wine grape	cytosol	1.6	6.67
VIT_07s0005g01490.t01	Wine grape	nucleus	15.2	6.59
VIT_15s0046g00760.t01	Wine grape	nucleus	17.6	6.33
VIT_16s0098g00350.t01	Wine grape	nucleus	16.8	5.84
VIT_05s0124g00250.t01	Wine grape	nucleus	15.73	5.44
VIT_04s0008g06180.t01	Wine grape	nucleus	14.13	4.68
VIT_00s0429g00030.t01	Wine grape	nucleus	9.07	3.07

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100853651	wikigene:100853651	MapMan:12.3.3.4	Gene3D:2.170.270.10	EMBL:AM481101
InterPro:AWS_dom	ProteinID:CAN75267	ProteinID:CAN75267.1	ProteinID:CCB44893	ProteinID:CCB44893.1	ncoils:Coil
UniProt:F6GY57	EMBL:FN594968	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560
EntrezGene:LOC100853651	wikigene:LOC100853651	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215
PANTHER:PTHR45396	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI00021086A1	ArrayExpress:VIT_18s0072g00210	EnsemblPlantsGene:VIT_18s0072g00210	EnsemblPlants:VIT_18s0072g00210.t01	RefSeq:XP_003634539	RefSeq:XP_003634539.1

Description

No Description!

Coordinates

chr18:-:19262617..19274847

Molecular Weight (calculated)

42806.5 Da

IEP (calculated)

5.986

GRAVY (calculated)

-0.594

Length

375 amino acids

Sequence
(BLAST)

001: MITTKYYWIF MFMHLHIKQE EDDITICECK YNTNDPDSAC GERCLNVLTS IECTPHYCPC SVHCKNQRFQ KHEYAKTKLF RTEGRGWGLL ANEDIKAGRF
101: IIEYCGEVIS WNEARERSLA YASQGINDAY IISLNARECI DATKSGSQAR FINHSCEPNC ETRKWSVLGE VRIGIFAMRD ISIGTELTYD YNFQWYGGAK
201: VHCLCGATSC CGFLGAKSRG FQDTDVWEDI DERCSLEDKP SLSMRPESMP KKRSKNNHNG PSRPLNREQV DAKFVAQFLA SKEAQEEILK YEEQREEASS
301: HLHLLYKDEV EPSIKENEIY GIDGVPASVA EKWIRASCMK LKAEFNLHSS IIRNIACTPQ RAPDEAQPSE GEPKP

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.