Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0014g00030.t01 | |
| VIT_19s0014g00060.t01 | |
| VIT_19s0015g00430.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77300.1 | VIT_19s0014g00030.t01 | AT4G00650.1 | 20711170 |
| AT1G77300.1 | VIT_19s0014g00060.t01 | AT4G00650.1 | 20711170 |
| AT1G77300.1 | VIT_19s0015g00430.t01 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g057880.2.1 | Tomato | nucleus | 48.94 | 36.53 |
| VIT_18s0072g00210.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 11.13 | 30.93 |
| Solyc06g059960.2.1 | Tomato | nucleus | 49.33 | 30.87 |
| VIT_18s0072g00220.t01 | Wine grape | nucleus | 10.94 | 30.81 |
| VIT_16s0022g01290.t01 | Wine grape | cytosol, nucleus, plastid | 1.44 | 27.78 |
| KRH53306 | Soybean | nucleus | 54.22 | 27.7 |
| Bra015678.1-P | Field mustard | nucleus | 43.19 | 27.16 |
| CDX87527 | Canola | nucleus | 43.19 | 27.16 |
| CDX88357 | Canola | nucleus | 42.99 | 27.04 |
| KRH64610 | Soybean | nucleus | 53.36 | 26.68 |
| VIT_16s0039g00740.t01 | Wine grape | mitochondrion | 11.23 | 25.77 |
| AT1G77300.1 | Thale cress | nucleus | 43.86 | 25.32 |
| VIT_18s0072g00200.t01 | Wine grape | nucleus | 12.09 | 24.47 |
| GSMUA_Achr9P08570_001 | Banana | nucleus | 45.3 | 23.3 |
| OQU85110 | Sorghum | nucleus | 36.47 | 19.96 |
| TraesCS2A01G005000.1 | Wheat | nucleus | 34.64 | 19.94 |
| HORVU2Hr1G000940.11 | Barley | nucleus | 34.64 | 19.92 |
| TraesCS2B01G015500.1 | Wheat | nucleus | 34.26 | 19.89 |
| TraesCS2D01G007100.1 | Wheat | nucleus | 34.74 | 19.76 |
| VIT_11s0037g00880.t01 | Wine grape | nucleus | 9.31 | 19.64 |
| Zm00001d016804_P002 | Maize | nucleus | 32.92 | 19.11 |
| VIT_05s0049g02100.t01 | Wine grape | cytosol | 0.77 | 8.89 |
| VIT_07s0005g01490.t01 | Wine grape | nucleus | 7.01 | 8.44 |
| VIT_07s0031g00320.t01 | Wine grape | nucleus | 6.62 | 7.9 |
| VIT_05s0124g00250.t01 | Wine grape | nucleus | 6.81 | 6.55 |
| VIT_04s0008g06180.t01 | Wine grape | nucleus | 6.91 | 6.35 |
| VIT_15s0046g00760.t01 | Wine grape | nucleus | 6.33 | 6.33 |
| VIT_16s0098g00350.t01 | Wine grape | nucleus | 5.85 | 5.65 |
| VIT_00s0429g00030.t01 | Wine grape | nucleus | 3.65 | 3.43 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.4 | Gene3D:2.170.270.10 | Gene3D:3.30.40.100 | InterPro:AWS_dom | ProteinID:CCB45450 |
| ProteinID:CCB45450.1 | UniProt:F6H0H8 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0018024 | GO:GO:0019538 | GO:GO:0032259 | GO:GO:0034968 | InterPro:IPR001214 | InterPro:IPR003616 |
| InterPro:IPR006560 | PFAM:PF00856 | PFscan:PS50280 | PFscan:PS50868 | PFscan:PS51215 | PANTHER:PTHR22884 |
| PANTHER:PTHR22884:SF466 | InterPro:Post-SET_dom | InterPro:SET_dom | SMART:SM00317 | SMART:SM00508 | SMART:SM00570 |
| SUPFAM:SSF82199 | UniParc:UPI0002109A54 | ArrayExpress:VIT_18s0001g01700 | EnsemblPlantsGene:VIT_18s0001g01700 | EnsemblPlants:VIT_18s0001g01700.t01 | SEG:seg |
Description
No Description!
Coordinates
chr18:-:2259998..2279932
Molecular Weight (calculated)
116372.0 Da
IEP (calculated)
8.040
GRAVY (calculated)
-0.643
Length
1042 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDKAFADCSI PQEKSNGEIN AELEISDASC EEDVYDAHLT SKEFGQRRST VTQSSSWMLI RSNLFLHRSR RTQTIDEVMV CHCKRPVEGR FGCGDECLNR
0101: MLNIECVQGT CPCGDLCSNQ QFQKRGYAKL KWFKCGKKGY GLQLQQDISQ GQFLIEYVGE VLDLQTYEAR QKEYASRGHK HFYFMTLNGS EVIDACAKGN
0201: LGRFINHSCD PNCRTEKWMV NGEICIGLFA LRDIKKGEEV TFDYNYVRVF GAAAKKCVCG SPQCRGYIGG DPLSTEVIVQ GDSDEEYPEP VMVNEDGETA
0301: DSFDNTISTT SSFDAAEIQS KAFSKNKLDN FKTAVQQLVV GPAISESQAS LEMVNSIGKL APVQSVKVSV QTEDLMNKPI TAIQQKIPME EETTSKPLCS
0401: DQRLDWPLTR MLNKASSDSA DANVSKSETP EEKQVCSKSR LLMKASRSSS SVKRGKSNSN PVNANKPPGI GNKTQVLSNK PKKLLDGSAN ARFEAVQEKL
0501: NELLDANGGI SKRKDSSKGY LKLLLLTVAS GDNGNREAIQ STRDLSMILD ALLKTKSRVV LVDILNKNGL RMLHNIMKQY SREFIKIPVL RKLLKVLEYL
0601: ALRGILTLEH INGGPPCPGM ESFRDSMLTL TEHNDKQVHQ IARSFRDRWI PRPVRKISCM DRDDGRMEFH RGSNCSRFSS QHNYWREQVG RPTEAIDCVK
0701: QSMLVTTPVD ACVQEESSAP GFGGSATNGT NTRKRKSRWD QPIEAHPDPR FHPHKEQKVQ PNLLQSFGSI PQPGISEMVL DHTNGISRMD KDCPGFVHNH
0801: PQQDQAEEEE DERQNLHEDV PPGFAYPLNT PLFSSNASSA SADLAQQTVS HSNSTFEVAG GHPQKRFNSC LPVSYGIPLS IVQQFGTPQG ETMQSWVVAP
0901: GMPFHPFPPL PPYPRDRRDP PSRTVNPITR NQPGEEQQNC HGSASCHTDQ STPSTSGASP PDVNVPCANN QHVFKRVKNN SYDLGRKYFR QQKWNNSKVR
1001: SPWHRKWNSW GFMANNARNG VCSIGIGNLS DIFSSCNLLS WK
0101: MLNIECVQGT CPCGDLCSNQ QFQKRGYAKL KWFKCGKKGY GLQLQQDISQ GQFLIEYVGE VLDLQTYEAR QKEYASRGHK HFYFMTLNGS EVIDACAKGN
0201: LGRFINHSCD PNCRTEKWMV NGEICIGLFA LRDIKKGEEV TFDYNYVRVF GAAAKKCVCG SPQCRGYIGG DPLSTEVIVQ GDSDEEYPEP VMVNEDGETA
0301: DSFDNTISTT SSFDAAEIQS KAFSKNKLDN FKTAVQQLVV GPAISESQAS LEMVNSIGKL APVQSVKVSV QTEDLMNKPI TAIQQKIPME EETTSKPLCS
0401: DQRLDWPLTR MLNKASSDSA DANVSKSETP EEKQVCSKSR LLMKASRSSS SVKRGKSNSN PVNANKPPGI GNKTQVLSNK PKKLLDGSAN ARFEAVQEKL
0501: NELLDANGGI SKRKDSSKGY LKLLLLTVAS GDNGNREAIQ STRDLSMILD ALLKTKSRVV LVDILNKNGL RMLHNIMKQY SREFIKIPVL RKLLKVLEYL
0601: ALRGILTLEH INGGPPCPGM ESFRDSMLTL TEHNDKQVHQ IARSFRDRWI PRPVRKISCM DRDDGRMEFH RGSNCSRFSS QHNYWREQVG RPTEAIDCVK
0701: QSMLVTTPVD ACVQEESSAP GFGGSATNGT NTRKRKSRWD QPIEAHPDPR FHPHKEQKVQ PNLLQSFGSI PQPGISEMVL DHTNGISRMD KDCPGFVHNH
0801: PQQDQAEEEE DERQNLHEDV PPGFAYPLNT PLFSSNASSA SADLAQQTVS HSNSTFEVAG GHPQKRFNSC LPVSYGIPLS IVQQFGTPQG ETMQSWVVAP
0901: GMPFHPFPPL PPYPRDRRDP PSRTVNPITR NQPGEEQQNC HGSASCHTDQ STPSTSGASP PDVNVPCANN QHVFKRVKNN SYDLGRKYFR QQKWNNSKVR
1001: SPWHRKWNSW GFMANNARNG VCSIGIGNLS DIFSSCNLLS WK
0001: MDCKENGVGD ASGCNIDANS LASNLAMNTN EDFYEKLSSR GQNLDSVSSL EIPQTASSVN HTIEGQRKCF TEIEQMGYGN SNSQEDAGNT DDDLYVCYNA
0101: DDTQEQGVVS GELEQSQELI CDTDLLVNCN KLDDGKESQD TNVSLVSIFS GSMQEKEAPQ AKEDEGYGGT TLPIGGSGID TESTFVNDAP EQFESLETTK
0201: HIKPDEVESD GISYRFDDGG KEGRNGPSSD LDTGSSDDIS LSQSFSFPDS LLDSSVFGCS ATESYLEDAI DIEGNGTIVV SPSLAITEML NNDDGGLCSH
0301: DLNKITVTET INPDLKLVRE DRLDTDLSVM NEKMLKNHVG DSSSESAVAA LSMNNGMAAD LRAENFSQSS PIDEKTLDME ANSPITDSSL IWNFPLNFGS
0401: GGIEVCNPEN AVEPLRIVDD NGRIGGEVAS ASGSDFCEAG MSSSRRKARD GKQCKVVQTK TSARHLRKSS RKKQSERDIE SIFKCSKQKR SSLLKTSRSS
0501: EWGLPSKTTE IFLQSNNIPY DGPPHHEPQR SQGNLNNGEH NRSSHNGNVE GSNRNIQASS GSCLRLKVKF GKSGGQNPLN ITVSKVSGNS LPGNGIVKAG
0601: TCLELPGSAH FGEDKMQTVE TKEDLVEKSN PVEKVSYLQS SDSMRDKKYN QDAGGLCRKV GGDVLDDDPH LSSIRMVEEC ERATGTQSLD AETSPDSEVI
0701: NSVPDSIVNI EHKEGLHHGF FSTPEDVVKK NRVLEKEDEL RASKSPSENG SHLIPNAKKA KHPKSKSNGT KKGKSKFSES AKDGRKNESH EGVEQRKSLN
0801: TSMGRDDSDY PEVGRIESHK TTGALLDADI GKTSATYGTI SSDVTHGEMV VDVTIEDSYS TESAWVRCDD CFKWRRIPAS VVGSIDESSR WICMNNSDKR
0901: FADCSKSQEM SNEEINEELG IGQDEADAYD CDAAKRGKEK EQKSKRLTGK QKACFKAIKT NQFLHRNRKS QTIDEIMVCH CKPSPDGRLG CGEECLNRML
1001: NIECLQGTCP AGDLCSNQQF QKRKYVKFER FQSGKKGYGL RLLEDVREGQ FLIEYVGEVL DMQSYETRQK EYAFKGQKHF YFMTLNGNEV IDAGAKGNLG
1101: RFINHSCEPN CRTEKWMVNG EICVGIFSMQ DLKKGQELTF DYNYVRVFGA AAKKCYCGSS HCRGYIGGDP LNGDVIIQSD SDEEYPELVI LDDDESGEGI
1201: LGATSRTFTD DADEQMPQSF EKVNGYKDLA PDNTQTQSSV SVKLPEREIP PPLLQPTEVL KELSSGISIT AVQQEVPAEK KTKSTSPTSS SLSRMSPGGT
1301: NSDKTTKHGS GEDKKILPRP RPRMKTSRSS ESSKRDKGGI YPGVNKAQVI PVNKLQQQPI KSKGSEKVSP SIETFEGKLN ELLDAVGGIS KRRDSAKGYL
1401: KLLLLTAASR GTDEEGIYSN RDLSMILDAL LKTKSKSVLV DIINKNGLQM LHNIMKQYRG DFKRIPIIRK LLKVLEYLAT RKILALEHII RRPPFAGMES
1501: FKDSVLSFTE HDDYTVHNIA RSFRDRWIPK HFRKPWRINR EERSESMRSP INRRFRASQE PRYDHQSPRP AEPAASVTSS KAATPETASV SEGYSEPNSG
1601: LPETNGRKRK SRWDQPSKTK EQRIMTILSQ QTDETNGNQD VQDDLPPGFS SPCTDVPDAI TAQPQQKFLS RLPVSYGIPL SIVHQFGSPG KEDPTTWSVA
1701: PGMPFYPFPP LPPVSHGEFF AKRNVRACSS SMGNLTYSNE ILPATPVTDS TAPTRKRELF SSDIGTTYFR QQKQSVPPWL RNNGGEKTAN SPIPGNLTLE
1801: KKLNS
0101: DDTQEQGVVS GELEQSQELI CDTDLLVNCN KLDDGKESQD TNVSLVSIFS GSMQEKEAPQ AKEDEGYGGT TLPIGGSGID TESTFVNDAP EQFESLETTK
0201: HIKPDEVESD GISYRFDDGG KEGRNGPSSD LDTGSSDDIS LSQSFSFPDS LLDSSVFGCS ATESYLEDAI DIEGNGTIVV SPSLAITEML NNDDGGLCSH
0301: DLNKITVTET INPDLKLVRE DRLDTDLSVM NEKMLKNHVG DSSSESAVAA LSMNNGMAAD LRAENFSQSS PIDEKTLDME ANSPITDSSL IWNFPLNFGS
0401: GGIEVCNPEN AVEPLRIVDD NGRIGGEVAS ASGSDFCEAG MSSSRRKARD GKQCKVVQTK TSARHLRKSS RKKQSERDIE SIFKCSKQKR SSLLKTSRSS
0501: EWGLPSKTTE IFLQSNNIPY DGPPHHEPQR SQGNLNNGEH NRSSHNGNVE GSNRNIQASS GSCLRLKVKF GKSGGQNPLN ITVSKVSGNS LPGNGIVKAG
0601: TCLELPGSAH FGEDKMQTVE TKEDLVEKSN PVEKVSYLQS SDSMRDKKYN QDAGGLCRKV GGDVLDDDPH LSSIRMVEEC ERATGTQSLD AETSPDSEVI
0701: NSVPDSIVNI EHKEGLHHGF FSTPEDVVKK NRVLEKEDEL RASKSPSENG SHLIPNAKKA KHPKSKSNGT KKGKSKFSES AKDGRKNESH EGVEQRKSLN
0801: TSMGRDDSDY PEVGRIESHK TTGALLDADI GKTSATYGTI SSDVTHGEMV VDVTIEDSYS TESAWVRCDD CFKWRRIPAS VVGSIDESSR WICMNNSDKR
0901: FADCSKSQEM SNEEINEELG IGQDEADAYD CDAAKRGKEK EQKSKRLTGK QKACFKAIKT NQFLHRNRKS QTIDEIMVCH CKPSPDGRLG CGEECLNRML
1001: NIECLQGTCP AGDLCSNQQF QKRKYVKFER FQSGKKGYGL RLLEDVREGQ FLIEYVGEVL DMQSYETRQK EYAFKGQKHF YFMTLNGNEV IDAGAKGNLG
1101: RFINHSCEPN CRTEKWMVNG EICVGIFSMQ DLKKGQELTF DYNYVRVFGA AAKKCYCGSS HCRGYIGGDP LNGDVIIQSD SDEEYPELVI LDDDESGEGI
1201: LGATSRTFTD DADEQMPQSF EKVNGYKDLA PDNTQTQSSV SVKLPEREIP PPLLQPTEVL KELSSGISIT AVQQEVPAEK KTKSTSPTSS SLSRMSPGGT
1301: NSDKTTKHGS GEDKKILPRP RPRMKTSRSS ESSKRDKGGI YPGVNKAQVI PVNKLQQQPI KSKGSEKVSP SIETFEGKLN ELLDAVGGIS KRRDSAKGYL
1401: KLLLLTAASR GTDEEGIYSN RDLSMILDAL LKTKSKSVLV DIINKNGLQM LHNIMKQYRG DFKRIPIIRK LLKVLEYLAT RKILALEHII RRPPFAGMES
1501: FKDSVLSFTE HDDYTVHNIA RSFRDRWIPK HFRKPWRINR EERSESMRSP INRRFRASQE PRYDHQSPRP AEPAASVTSS KAATPETASV SEGYSEPNSG
1601: LPETNGRKRK SRWDQPSKTK EQRIMTILSQ QTDETNGNQD VQDDLPPGFS SPCTDVPDAI TAQPQQKFLS RLPVSYGIPL SIVHQFGSPG KEDPTTWSVA
1701: PGMPFYPFPP LPPVSHGEFF AKRNVRACSS SMGNLTYSNE ILPATPVTDS TAPTRKRELF SSDIGTTYFR QQKQSVPPWL RNNGGEKTAN SPIPGNLTLE
1801: KKLNS
Arabidopsis Description
EFShistone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) [Source:TAIR;Acc:AT1G77300]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.