Factsheet for VIT_18s0072g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	68.92	68.0
CDX67669	Canola	cytosol, nucleus, plastid	35.14	50.58
Solyc07g008580.1.1	Tomato	nucleus	37.3	49.64
PGSC0003DMT400059166	Potato	nucleus	39.73	48.36
VIT_18s0072g00200.t01	Wine grape	nucleus	67.3	48.35
KRH35109	Soybean	nucleus	61.08	47.08
CDX87571	Canola	nucleus	58.65	47.07
Bra015723.1-P	Field mustard	nucleus	58.38	46.85
CDX88310	Canola	nucleus	58.11	46.64
Solyc09g060000.1.1	Tomato	nucleus	32.7	46.01
KRG91687	Soybean	nucleus	61.62	45.97
Solyc07g008460.2.1	Tomato	nucleus	54.86	44.91
PGSC0003DMT400028500	Potato	nucleus	47.84	44.14
PGSC0003DMT400059198	Potato	nucleus	42.43	43.85
AT1G76710.3	Thale cress	nucleus	59.73	42.58
Solyc07g008500.1.1	Tomato	nucleus	32.43	41.67
PGSC0003DMT400028514	Potato	nucleus	25.14	41.52
TraesCS2A01G302100.1	Wheat	nucleus	54.86	40.44
Os04t0429100-01	Rice	nucleus	56.49	40.35
TraesCS2D01G300800.1	Wheat	nucleus	54.59	40.24
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	54.32	39.88
GSMUA_Achr10P...	Banana	nucleus	58.92	39.71
PGSC0003DMT400086207	Potato	nucleus	26.49	39.36
TraesCS2B01G317900.1	Wheat	nucleus	54.86	38.37
Zm00001d003679_P006	Maize	nucleus	52.7	38.01
EES10812	Sorghum	nucleus	52.7	37.43
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	5.14	35.19
VIT_16s0039g00740.t01	Wine grape	mitochondrion	24.32	19.82
VIT_11s0037g00880.t01	Wine grape	nucleus	23.24	17.41
VIT_18s0001g01700.t01	Wine grape	nucleus	30.81	10.94
VIT_07s0031g00320.t01	Wine grape	nucleus	18.11	7.67
VIT_07s0005g01490.t01	Wine grape	nucleus	16.76	7.17
VIT_15s0046g00760.t01	Wine grape	nucleus	18.92	6.72
VIT_05s0049g02100.t01	Wine grape	cytosol	1.62	6.67
VIT_16s0098g00350.t01	Wine grape	nucleus	18.38	6.3
VIT_05s0124g00250.t01	Wine grape	nucleus	14.59	4.98
VIT_04s0008g06180.t01	Wine grape	nucleus	14.59	4.77
VIT_00s0429g00030.t01	Wine grape	nucleus	8.92	2.98

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100853610	wikigene:100853610	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom
ProteinID:CBI18233	ProteinID:CBI18233.3	ncoils:Coil	UniProt:D7SRF2	EMBL:FN594968	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	EntrezGene:LOC100853610	wikigene:LOC100853610	PFAM:PF00856
PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PANTHER:PTHR45396	InterPro:Post-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	UniParc:UPI0001BE15FE	ArrayExpress:VIT_18s0072g00220
EnsemblPlantsGene:VIT_18s0072g00220	EnsemblPlants:VIT_18s0072g00220.t01	RefSeq:XP_003634538	RefSeq:XP_003634538.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:19280775..19290355

Molecular Weight (calculated)

41581.4 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.596

Length

370 amino acids

Sequence
(BLAST)

001: MQCGMLLLCS RHIKQKENDI AICECKYKAN DPDSACGERC WNVLTSIECT PRYCPCSIHC KNQRFQKREY AKTKLFRAEG RGWGLLATEN IKAGEFVMEY
101: CGEVISRTEA RGRSQVYVSQ GLKDVYIIPL NARECIDATK KGNLARFINH SCQPNCETMK WSVLGEDRVG IFALRNISVG TELTYSYNFE WYSGAKVRCL
201: CGATRCSGFL GGKPCGFQED SFAWEKNNER YSGGDKPSSS LGPKKRLKHD HNGGSRPLPG KQVDAKYVAQ FLASKDAQEE VLKNEEERKE ALSHLASVYR
301: EIEPAIEDHD MYGPANVLTD VAEQWIGASC RKLKAEFNLH SSIIRNLICP PQRAPEDAKP SAGDPDHEIK

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.