CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015723.1-P	Field mustard	nucleus	94.79	94.79
CDX87571	Canola	nucleus	94.36	94.36
CDX67669	Canola	cytosol, nucleus, plastid	45.77	82.1
AT1G76710.3	Thale cress	nucleus	88.72	78.81
KRH35109	Soybean	nucleus	63.34	60.83
KRG91687	Soybean	nucleus	64.43	59.88
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	48.16	59.2
VIT_18s0072g00220.t01	Wine grape	nucleus	46.64	58.11
VIT_18s0072g00200.t01	Wine grape	nucleus	63.99	57.28
Solyc07g008460.2.1	Tomato	nucleus	51.63	52.65
Solyc07g008580.1.1	Tomato	nucleus	31.45	52.16
TraesCS2A01G302100.1	Wheat	nucleus	56.62	51.99
TraesCS2D01G300800.1	Wheat	nucleus	56.18	51.59
Zm00001d003679_P006	Maize	nucleus	57.27	51.46
EES10812	Sorghum	nucleus	57.92	51.25
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	55.97	51.19
Os04t0429100-01	Rice	nucleus	57.48	51.16
PGSC0003DMT400059166	Potato	nucleus	33.41	50.66
GSMUA_Achr10P...	Banana	nucleus	59.65	50.09
PGSC0003DMT400028500	Potato	nucleus	42.95	49.38
TraesCS2B01G317900.1	Wheat	nucleus	56.18	48.96
Solyc09g060000.1.1	Tomato	nucleus	27.11	47.53
PGSC0003DMT400028514	Potato	nucleus	22.99	47.32
PGSC0003DMT400059198	Potato	nucleus	36.01	46.37
PGSC0003DMT400086207	Potato	nucleus	24.3	44.98
Solyc07g008500.1.1	Tomato	nucleus	27.98	44.79
CDY41194	Canola	nucleus	20.61	27.38
CDX98400	Canola	nucleus	18.22	26.17
CDX67818	Canola	nucleus	18.22	26.17
CDX71856	Canola	nucleus	20.39	26.11
CDX79778	Canola	cytosol	20.17	25.48
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.61	25.2
CDX83438	Canola	cytosol	19.52	24.39
CDX95590	Canola	nucleus	19.09	24.11
CDY36467	Canola	nucleus	18.44	17.17
CDY23260	Canola	nucleus	18.22	17.0
CDY15252	Canola	nucleus	12.36	12.87
CDX95185	Canola	endoplasmic reticulum, nucleus	13.45	12.68
CDX89960	Canola	nucleus	12.36	8.93
CDY32472	Canola	nucleus	12.36	8.86
CDY37467	Canola	nucleus	12.36	8.58
CDX87527	Canola	nucleus	27.55	7.66
CDX88357	Canola	nucleus	27.55	7.66
CDY07102	Canola	nucleus	14.1	7.59
CDY22021	Canola	nucleus	13.88	7.51
CDY38942	Canola	nucleus, plastid	13.88	7.06
CDX92851	Canola	mitochondrion	13.88	6.99
CDX67860	Canola	nucleus	14.53	6.95
CDX89569	Canola	nucleus, plastid	13.67	6.92
CDY25072	Canola	nucleus	14.53	6.86
CDY29869	Canola	mitochondrion	14.1	6.79
CDY14381	Canola	nucleus	13.23	6.26
CDY35655	Canola	nucleus	13.23	6.26
CDY06182	Canola	nucleus	13.02	5.65
CDY19078	Canola	nucleus	12.36	5.53
CDY15398	Canola	nucleus	12.36	5.51
CDY17381	Canola	nucleus	9.98	5.47
CDY10007	Canola	nucleus	12.8	5.3
CDY52297	Canola	nucleus	13.67	4.89
CDX95184	Canola	cytosol	2.6	1.06

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:A0A078DGF5	InterPro:AWS_dom	EnsemblPlants:CDX88310
ProteinID:CDX88310	ProteinID:CDX88310.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00147812001	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	PFAM:PF00856	PFscan:PS50280
PFscan:PS50868	PFscan:PS51215	PANTHER:PTHR45396	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	UniParc:UPI0004EECD46	:	:

Description

BnaC06g37540D

Coordinates

chrLK031855:-:276842..279158

Molecular Weight (calculated)

51858.6 Da

IEP (calculated)

4.761

GRAVY (calculated)

-0.656

Length

461 amino acids

Sequence
(BLAST)

001: MQFTCDPDQE GDEVPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKSEGRG
101: YGLVAVEDIK EGQFIIEYCG EVISWKEAKC RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC KPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGTKVRCLCG AVSCSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPTS KNVESNKNEE KDIVKEESTA LIVEQSDSAP
301: MEVDAVTETV KTEEDMKLMT SQDSSQKTAV ISKGLARKRG RPITKNVVKK HVDIANVVQL LATKEAQDEV LKCEEVKKEA AVRLTSLYDE IRPAIEEHER
401: DSQDSVATSV AEKWIQASCY KLKAEFDLYS CVIKNIACTP IKPHDSANTK AEEAETKPSE S

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.