CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004809.1-P	Field mustard	nucleus	93.9	95.68
CDX79778	Canola	cytosol	92.31	95.34
AT2G44150.1	Thale cress	nucleus	78.78	81.82
CDX83438	Canola	cytosol	72.68	74.25
CDX95590	Canola	nucleus	71.62	73.97
PGSC0003DMT400010951	Potato	cytosol	38.99	63.91
CDY41194	Canola	nucleus	55.7	60.52
GSMUA_Achr2P12180_001	Banana	nucleus	58.36	58.98
CDX71856	Canola	nucleus	55.7	58.33
CDX98400	Canola	nucleus	48.01	56.39
CDX67818	Canola	nucleus	47.21	55.45
Os09t0307800-01	Rice	cytosol	48.01	53.24
Solyc12g100290.1.1	Tomato	nucleus	61.01	53.0
VIT_16s0039g00740.t01	Wine grape	mitochondrion	63.66	52.86
TraesCS7A01G453700.1	Wheat	nucleus	47.21	52.66
TraesCS7D01G443000.1	Wheat	nucleus	47.21	52.66
TraesCS7B01G354300.1	Wheat	nucleus	46.95	52.06
KRH75137	Soybean	cytosol	17.24	51.18
TraesCS5D01G184500.1	Wheat	nucleus	47.75	50.7
Zm00001d005563_P006	Maize	nucleus	44.83	49.85
TraesCS5A01G179900.1	Wheat	nucleus	47.48	49.45
TraesCS5B01G177800.2	Wheat	nucleus	47.48	49.45
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	58.62	49.0
Zm00001d020038_P001	Maize	nucleus	45.09	47.75
HORVU5Hr1G054880.2	Barley	mitochondrion	46.68	45.95
OQU89246	Sorghum	nucleus	44.56	45.04
HORVU7Hr1G103420.7	Barley	nucleus	46.95	42.86
CDX67669	Canola	cytosol, nucleus, plastid	17.77	26.07
CDY36467	Canola	nucleus	32.89	25.05
CDY23260	Canola	nucleus	32.63	24.9
CDX87571	Canola	nucleus	25.46	20.82
CDX88310	Canola	nucleus	25.2	20.61
CDY15252	Canola	nucleus	14.06	11.96
CDX95185	Canola	endoplasmic reticulum, nucleus	15.38	11.86
CDY32472	Canola	nucleus	14.59	8.55
CDY37467	Canola	nucleus	14.59	8.28
CDX89960	Canola	nucleus	13.79	8.15
CDX92851	Canola	mitochondrion	18.04	7.42
CDY29869	Canola	mitochondrion	18.57	7.31
CDY22021	Canola	nucleus	16.18	7.16
CDY07102	Canola	nucleus	16.18	7.13
CDY38942	Canola	nucleus, plastid	16.71	6.95
CDX89569	Canola	nucleus, plastid	16.45	6.81
CDX67860	Canola	nucleus	16.98	6.64
CDY25072	Canola	nucleus	16.98	6.55
CDY14381	Canola	nucleus	16.45	6.37
CDY35655	Canola	nucleus	16.45	6.37
CDY19078	Canola	nucleus	16.98	6.21
CDY15398	Canola	nucleus	16.98	6.19
CDX88357	Canola	nucleus	26.53	6.04
CDX87527	Canola	nucleus	26.53	6.04
CDY06182	Canola	nucleus	16.45	5.84
CDY17381	Canola	nucleus	12.73	5.71
CDY10007	Canola	nucleus	15.92	5.39
CDY52297	Canola	nucleus	16.45	4.81
CDX95184	Canola	cytosol	3.71	1.24

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:A0A078FTM0	UniProt:A0A078FTM0	InterPro:AWS_dom
EnsemblPlants:CDY17880	ProteinID:CDY17880	ProteinID:CDY17880.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	EnsemblPlantsGene:GSBRNA2T00002220001	InterPro:Hist-Lys_N-MeTrfase_SET2_plant
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	PFAM:PF00856	PFscan:PS50280
PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884	InterPro:Post-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	UniParc:UPI0004EEA3CA	SEG:seg

Description

BnaC04g03390DBnaC04g03390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTM0]

Coordinates

chrLK032079:-:275425..277915

Molecular Weight (calculated)

43119.6 Da

IEP (calculated)

7.206

GRAVY (calculated)

-0.516

Length

377 amino acids

Sequence
(BLAST)

001: MPASKKVGSC FCFFLFFQIS DRNHIGQVFN KLLKQIGEAE EEFELPDWLN KGKPTPYIFI KRNTYLTKKI KKRFEDDGIF CSCSLSPDSS SSTVCGSNCH
101: CGMLFSSCSS SCKCGIECKN KPFQHRYVKK LKLIQTEKCG AGVVAEEEIE QGEFIIEYVG EVIDDKTCEE RLWKMKHRGE TNFYLCEINR DMVIDATHKG
201: NKSRYINHSC NPNTQMQKWI IDGETRIGIF ATCDIKKGEH LTYDYQFVQF GADQDCHCGA TGCRRKLGVK PKPKLPSDEA LKVVVSEVAQ TLPEVHQNGA
301: IHEHDEGKPW NKLKQEQPCP HNCIGLVLRL SRTRSDRCFC IIRNFDAVTR KHAVMFEDGA TEFIDMSKEE DWEILSD

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.