CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005563_P006	Maize	nucleus	82.57	90.86
Zm00001d020038_P001	Maize	nucleus	83.65	87.64
TraesCS7D01G443000.1	Wheat	nucleus	58.18	64.2
TraesCS7B01G354300.1	Wheat	nucleus	58.45	64.12
TraesCS7A01G453700.1	Wheat	nucleus	57.91	63.91
Os09t0307800-01	Rice	cytosol	58.18	63.82
TraesCS5D01G184500.1	Wheat	nucleus	59.25	62.25
TraesCS5B01G177800.2	Wheat	nucleus	59.52	61.33
TraesCS5A01G179900.1	Wheat	nucleus	59.52	61.33
HORVU5Hr1G054880.2	Barley	mitochondrion	57.91	56.4
GSMUA_Achr1P23230_001	Banana	cytosol	44.77	55.67
HORVU7Hr1G103420.7	Barley	nucleus	57.91	52.3
KRH09264	Soybean	nucleus	42.9	45.85
KRH38763	Soybean	cytosol	42.9	45.85
CDX79778	Canola	cytosol	44.24	45.21
AT2G44150.1	Thale cress	nucleus	43.7	44.9
Bra004809.1-P	Field mustard	nucleus	44.5	44.86
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.04	44.56
Bra007496.1-P	Field mustard	nucleus	40.75	44.19
CDY41194	Canola	nucleus	40.75	43.8
AT3G59960.1	Thale cress	nucleus	37.8	42.86
CDX71856	Canola	nucleus	41.02	42.5
Bra000343.1-P	Field mustard	cytosol	41.02	42.27
CDX83438	Canola	cytosol	41.29	41.73
CDX95590	Canola	nucleus	39.95	40.82
PGSC0003DMT400010951	Potato	cytosol	24.93	40.43
CDX98400	Canola	nucleus	34.58	40.19
KRH75137	Soybean	cytosol	13.67	40.16
CDX67818	Canola	nucleus	34.32	39.88
Bra003396.1-P	Field mustard	cytosol	27.35	39.38
Solyc12g100290.1.1	Tomato	nucleus	41.29	35.48
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	42.09	34.81
VIT_16s0039g00740.t01	Wine grape	mitochondrion	42.36	34.8
OQU80550	Sorghum	nucleus	26.01	29.94
KXG30618	Sorghum	nucleus	31.64	20.1
EES10812	Sorghum	nucleus	24.13	17.27
OQU87254	Sorghum	nucleus	16.35	6.88
KXG31547	Sorghum	cytosol, nucleus, plastid	17.43	6.7
KXG40039	Sorghum	nucleus	14.48	6.01
KXG22920	Sorghum	nucleus	17.96	5.9
OQU85110	Sorghum	nucleus	29.76	5.83
EER89265	Sorghum	plastid	14.48	5.79
EER96448	Sorghum	nucleus	15.82	5.78
KXG36166	Sorghum	nucleus, plastid	16.09	3.15

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	UniProt:A0A1W0W4H6	InterPro:AWS_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	EnsemblPlants:OQU89246
ProteinID:OQU89246	ProteinID:OQU89246.1	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215
PFscan:PS51578	PANTHER:PTHR22884	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508
SMART:SM00570	EnsemblPlantsGene:SORBI_3002G164800	SUPFAM:SSF82199	UniParc:UPI0009DC91D2	:	:

Description

hypothetical protein

Coordinates

chr2:-:51266086..51271630

Molecular Weight (calculated)

43212.9 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.455

Length

373 amino acids

Sequence
(BLAST)

001: MVRVNSSSSA PGVNLTEQTE NVFEQLISKI EPADFDPRPF LKQLNVLGRY EPIKRNVYCT KRRVEDYGIS CRCKPSPGSS VVCGRDCHCG MLFSCCSSQC
101: ECDNACTNKS FQHRPLKKTK LIKTEKCGHG LVAEDEIKKG EFVIEYVGEV IDDRACENRL WTMKRLNDTD FYLCEVSSNM VIDATNKGNL SRFINHSCEP
201: NTKMQKWTVD GETRVGIFAL RDIKIGEELT YDYKFVQFGA AQVCHCGSSK CRKMLGTAKY SGSSQNHHAK KKKRKTNCEN CIQQFLRLWH PQQRMYVGCW
301: IVDFDQETKM HTLQFIDLHT EKFDLKEEEW HFLELYIQTG VEVELNFSRI HIYLELLLFI GHKIGLLWYL DQL

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.