CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0655300-01	Rice	cytosol, nucleus	5.41	92.31
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	5.07	83.33
Zm00001d011490_P003	Maize	nucleus	92.45	79.0
TraesCS3D01G237600.2	Wheat	nucleus	78.13	67.81
TraesCS3A01G237200.2	Wheat	nucleus	78.35	67.61
TraesCS3B01G265800.1	Wheat	nucleus	78.24	67.51
HORVU3Hr1G059080.11	Barley	cytosol, mitochondrion, nucleus, plastid	77.79	67.32
Zm00001d044020_P001	Maize	cytosol	15.33	53.12
GSMUA_Achr2P06290_001	Banana	nucleus	54.45	50.9
GSMUA_Achr8P28030_001	Banana	nucleus	54.57	48.45
CDY29869	Canola	mitochondrion	51.18	47.44
PGSC0003DMT400023546	Potato	nucleus	37.32	47.02
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	51.75	46.79
AT4G27910.1	Thale cress	nucleus	52.54	45.37
VIT_15s0046g00760.t01	Wine grape	nucleus	53.1	45.2
KRH47912	Soybean	nucleus	50.39	45.2
CDX92851	Canola	mitochondrion	46.56	45.09
KRH06474	Soybean	nucleus	50.17	45.09
Bra040838.1-P	Field mustard	mitochondrion, nucleus	47.35	45.06
KXG31547	Sorghum	cytosol, nucleus, plastid	48.59	44.43
CDY35655	Canola	nucleus	48.7	44.35
CDY14381	Canola	nucleus	48.59	44.25
KRH64461	Soybean	nucleus	52.87	44.25
VIT_16s0098g00350.t01	Wine grape	nucleus	53.66	44.11
KRH53486	Soybean	nucleus	52.87	43.95
AT5G53430.1	Thale cress	nucleus	51.3	43.62
Solyc01g095890.2.1	Tomato	nucleus	49.61	41.98
Bra003056.1-P	Field mustard	nucleus	34.16	41.91
CDY25072	Canola	nucleus	45.1	40.94
KRH68208	Soybean	nucleus	44.87	40.49
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	44.98	40.47
CDX67860	Canola	nucleus	43.86	40.35
AT3G61740.1	Thale cress	nucleus	45.32	39.49
Bra003467.1-P	Field mustard	nucleus	40.92	35.07
OQU80550	Sorghum	nucleus	8.12	22.22
EER96448	Sorghum	nucleus	22.21	19.31
OQU89246	Sorghum	nucleus	6.88	16.35
KXG30618	Sorghum	nucleus	9.13	13.8
EES10812	Sorghum	nucleus	7.1	12.09
EER89265	Sorghum	plastid	10.37	9.86
KXG40039	Sorghum	nucleus	9.36	9.23
KXG22920	Sorghum	nucleus	11.05	8.63
KXG36166	Sorghum	nucleus, plastid	15.22	7.09
OQU85110	Sorghum	nucleus	11.39	5.3

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.5	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.40.10	UniProt:A0A1W0VYQ6
InterPro:EPHD	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	GO:GO:0046872	GO:GO:0051571	InterPro:Hist-Lys_N-MeTrfase_ATX	InterPro:IPR000313
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR025780	InterPro:IPR034732
EnsemblPlants:OQU87254	ProteinID:OQU87254	ProteinID:OQU87254.1	PFAM:PF00855	PFAM:PF00856	PFAM:PF13831
PFAM:PF13832	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS50280	PFscan:PS50868	PFscan:PS51566
PFscan:PS51805	PANTHER:PTHR13793	PANTHER:PTHR13793:SF5	InterPro:PWWP_dom	InterPro:Post-SET_dom	InterPro:SET_dom
SMART:SM00249	SMART:SM00317	EnsemblPlantsGene:SORBI_3003G241700	SUPFAM:SSF57903	SUPFAM:SSF63748	SUPFAM:SSF82199
UniParc:UPI0009DC93A4	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:58083731..58092359

Molecular Weight (calculated)

102107.0 Da

IEP (calculated)

7.485

GRAVY (calculated)

-0.574

Length

887 amino acids

Sequence
(BLAST)

001: MVEGYRARRN FGDSRKYLAS GSTLTSVHDE PYSNYHRKEV MLRHYYEEED EEDEEDEQEE DEGYEEEDKE EIFHCTEQLV YGDIVWAKLG KRQPMWPGVL
101: IDPTQQVAAD AMPPQPRRVA VLCVMLFGWC TEFSDEKKYV WVRQGLIFPF SDYMDRFQGQ TELSSCKPAD FRRAVEEAFL ADQGFSEVVI DCSTKGQPVV
201: CHSFPDDLHE VTGSNELEYQ PQIKRCRRAL QCESCGNCFP NKDTNKMVHV MEQLACRLCA GILALKKYCG ICLKSLQHKY GGRWVCCHGC ESWVHAECDE
301: NCSNLKDLQD NSYRCPYCRV KMNSTLPGKN TKFSDVRKDS SAQKGGKPDK VALVCFDLEG TYQPDLELIS CHCGPCKGQK FLFNEWERHA GCRSKNWRSS
401: IKLKGSLMPF GKWIDRHQPG VCPTNPSKRL SQKMKKQKLI DLLNDPYDPV NVKWTTERCA VCRWVEDWDY NKIVICNRCQ IAVHQECYGV TGKQDFTSWV
501: CRACEKPEQK RECCLCPVKG GALKPTNVDN LWVHITCAWF QPQVAFASDE LMEPAVGILN IQPLLFMKMC VICKQIHGSC TQCYRCSTYY HAICASRAGY
601: RMELQCLEKN GKQTTKKISY CAQHRSPNPD NVLIIQTPAG TFSSKKLVQS NGKVAASRLI RKDIPLDLPL EVEISENLSA ARCRIYVRKD LKRSREGAIA
701: HRVRGPCQHR WDEIDILNPP REERDPESFC TFKERLCYLQ KTEHGRVCFG RSGIHRWGLF ARRDIQEGEM VLEYRGEQVR RSVADLREEK YRVQGKDCYL
801: FKISEEVVVD ATDKGNVARL INHSCTPNCY ARIMSVGHDE SRIVLIARKN VCAGDELTYD YLFDPDEADE RKVPCLCQTA NCRKFMN

Best Arabidopsis Sequence Match ( AT4G27910.1 )
(BLAST)

0001: MIIKRKFKTQ IPSLERCKLG NESRKKKRKL NLGGGGYYYP LNLLGEIAAG IVPGNGRNGF SASWCTEVTK PVEVEESLSK RRSDSGTVRD SPPAEVSRPP
0101: LVRTSRGRIQ VLPSRFNDSV LDNWRKDSKS DCDLEEEEIE CRNEKVVSFR VPKATNLKSK ELDRKSKYSA LCKEERFHEQ HNDEARARVD EKLPNKKGTF
0201: GPENFYSGDL VWAKSGRNEP FWPAIVIDPM TQAPELVLRS CIPDAACVVF FGHSGNENER DYAWVRRGMI FPFVDYVARF QEQPELQGCK PGNFQMALEE
0301: AFLADQGFTE KLMHDIHLAA GNSTFDDSFY RWIQETAVSN QELNNNAPRQ GLLKKHRNPL ACAGCETVIS FEMAKKMKDL IPGDQLLCKP CSRLTKSKHI
0401: CGICKKIRNH LDNKSWVRCD GCKVRIHAEC DQISDRHLKD LRETDYYCPT CRAKFNFDLS DSEKQNSKSK VAKGDGQMVL PDKVIVVCAG VEGVYFPRLH
0501: LVVCKCGSCG PKKKALSEWE RHTGSKSKNW KTSVKVKSSK LALEDWMMNL AELHANATAA KVPKRPSIKQ RKQRLLAFLS ETYEPVNAKW TTERCAVCRW
0601: VEDWDYNKII ICNRCQIAVH QECYGARHVR DFTSWVCKAC ERPDIKRECC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASEEKMEP AVGILSIPST
0701: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HCLEKNGQQI TKMVSYCAYH RAPNPDNVLI IQTPSGAFSA KSLVQNKKKG GSRLISLIRE
0801: DDEAPAENTI TCDPFSAARC RVFKRKINSK KRIEEEAIPH HTRGPRHHAS AAIQTLNTFR HVPEEPKSFS SFRERLHHLQ RTEMDRVCFG RSGIHGWGLF
0901: ARRNIQEGEM VLEYRGEQVR GSIADLREAR YRRVGKDCYL FKISEEVVVD ATDKGNIARL INHSCTPNCY ARIMSVGDEE SRIVLIAKAN VAVGEELTYD
1001: YLFDPDEAEE LKVPCLCKAP NCRKFMN

Arabidopsis Description

ATX4Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UVA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.