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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EES13318
KXG25810
KXG37542
KXG40039
OQU79846
OQU89244
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G02580.1 KXG40039 AT1G02580.1 10962025
AT1G02580.1 KXG40039 AT1G02580.1 11148284
AT1G02580.1 KXG25810 AT2G35670.1 15456723
AT1G02580.1 KXG37542 AT2G35670.1 15456723
AT1G02580.1 OQU89244 AT2G35670.1 15456723
AT1G02580.1 KXG25810 AT2G35670.1 16924116
AT1G02580.1 KXG37542 AT2G35670.1 16924116
AT1G02580.1 OQU89244 AT2G35670.1 16924116
AT1G02580.1 EES13318 AT3G20740.1 10962025
AT1G02580.1 OQU79846 AT3G20740.1 10962025
AT1G02580.1 EES13318 AT3G20740.1 11114524
AT1G02580.1 OQU79846 AT3G20740.1 11114524
AT1G02580.1 EES13318 AT3G20740.1 11148284
AT1G02580.1 OQU79846 AT3G20740.1 11148284
AT1G02580.1 EES13318 AT3G20740.1 15456723
AT1G02580.1 OQU79846 AT3G20740.1 15456723
AT1G02580.1 EES13318 AT3G20740.1 15469499
AT1G02580.1 OQU79846 AT3G20740.1 15469499
AT1G02580.1 EES13318 AT3G20740.1 18812497
AT1G02580.1 OQU79846 AT3G20740.1 18812497
AT1G02580.1 OQU91278 AT5G58230.1 12970192
AT4G02020.1 KXG25810 AT2G35670.1 15456723
AT4G02020.1 KXG37542 AT2G35670.1 15456723
AT4G02020.1 OQU89244 AT2G35670.1 15456723
AT4G02020.1 KXG25810 AT2G35670.1 16924116
AT4G02020.1 KXG37542 AT2G35670.1 16924116
AT4G02020.1 OQU89244 AT2G35670.1 16924116
AT4G02020.1 EES13318 AT3G20740.1 15456723
AT4G02020.1 OQU79846 AT3G20740.1 15456723
AT4G02020.1 KXG25810 AT4G16845.1 15456723
AT4G02020.1 KXG37542 AT4G16845.1 15456723
AT4G02020.1 OQU89244 AT4G16845.1 15456723
AT4G02020.1 KXG25810 AT5G51230.1 15456723
AT4G02020.1 KXG37542 AT5G51230.1 15456723
AT4G02020.1 OQU89244 AT5G51230.1 15456723
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d047636_P002 Maize nucleus 83.09 84.12
Os03t0307800-01 Rice nucleus 76.08 76.42
TraesCS4B01G181400.3 Wheat nucleus, plastid 73.19 73.93
TraesCS4D01G184600.3 Wheat nucleus, plastid 72.86 73.6
Zm00001d028890_P002 Maize nucleus 88.43 71.56
HORVU4Hr1G053740.8 Barley cytosol, mitochondrion, nucleus 71.75 70.72
TraesCS4A01G121300.4 Wheat mitochondrion 71.97 66.84
GSMUA_Achr1P24850_001 Banana nucleus 59.07 60.27
VIT_07s0005g01490.t01 Wine grape nucleus 51.5 53.53
PGSC0003DMT400023342 Potato nucleus 49.28 53.44
Solyc01g079390.2.1 Tomato nucleus 48.83 52.96
AT4G02020.1 Thale cress nucleus 47.5 49.88
KRH31789 Soybean nucleus 48.05 49.66
KRH69214 Soybean nucleus 47.94 49.65
CDY22021 Canola nucleus 46.5 49.06
CDY07102 Canola nucleus 46.38 48.72
Bra036300.1-P Field mustard nucleus 40.82 47.05
KRH28654 Soybean nucleus 35.71 45.86
KRG96530 Soybean cytosol, nucleus 34.37 45.58
CDY15252 Canola nucleus 22.36 45.37
CDY17381 Canola nucleus 41.82 44.71
KRH68267 Soybean nucleus 35.93 43.41
KRH68336 Soybean nucleus 38.49 42.51
EER89265 Sorghum plastid 43.94 42.34
AT1G02580.1 Thale cress nucleus 29.37 38.32
Bra033334.1-P Field mustard nucleus 26.59 37.46
CDX89960 Canola nucleus 26.59 37.46
CDY32472 Canola nucleus 26.36 36.86
Bra032592.1-P Field mustard nucleus 25.92 36.46
CDY37467 Canola nucleus 26.92 36.45
OQU80550 Sorghum nucleus 6.01 16.67
OQU89246 Sorghum nucleus 6.01 14.48
EES10812 Sorghum nucleus 7.23 12.48
KXG30618 Sorghum nucleus 7.9 12.1
OQU87254 Sorghum nucleus 9.23 9.36
KXG31547 Sorghum cytosol, nucleus, plastid 9.45 8.76
EER96448 Sorghum nucleus 9.9 8.73
KXG22920 Sorghum nucleus 9.9 7.83
KXG36166 Sorghum nucleus, plastid 10.12 4.78
OQU85110 Sorghum nucleus 9.45 4.46
Protein Annotations
KEGG:00310+2.1.1.43MapMan:12.3.3.1.1.4MapMan:12.3.3.3Gene3D:2.170.270.10EntrezGene:8083989UniProt:C5WMG6
InterPro:CXC_domGO:GO:0000003GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005654GO:GO:0005677GO:GO:0006139GO:GO:0006342GO:GO:0006351
GO:GO:0006464GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0009058
GO:GO:0009628GO:GO:0009791GO:GO:0009987GO:GO:0016043GO:GO:0016740GO:GO:0018024
GO:GO:0019538GO:GO:0031519GO:GO:0032259GO:GO:0034968GO:GO:0040029GO:GO:0048587
GO:GO:0070734EMBL:GQ456953InterPro:Hist-Lys_N-MeTrfase_EZInterPro:IPR001214InterPro:IPR025778InterPro:IPR026489
EnsemblPlants:KXG40039ProteinID:KXG40039ProteinID:KXG40039.2PFAM:PF00856PFscan:PS50280PFscan:PS51576
PFscan:PS51633PANTHER:PTHR22884PANTHER:PTHR22884:SF237InterPro:SANT/MybInterPro:SET_domSMART:SM00317
SMART:SM01114EnsemblPlantsGene:SORBI_3001G395500SUPFAM:SSF82199InterPro:Tesmin/TSO1-like_CXCUniParc:UPI0001A82B22RefSeq:XP_002465374.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:68134741..68143521
Molecular Weight (calculated)
100630.0 Da
IEP (calculated)
7.983
GRAVY (calculated)
-0.713
Length
899 amino acids
Sequence
(BLAST)
001: MASSSKASDS SSQRSKRSDQ GMMGRDAAAA SAVSIHANLT QLIRQIKSGR LAYIKEKLEA NRKTLQRHSC ALFDVAAAAE VASRGTYGGN ALSQRAAEGQ
101: SRLAGSDLAN GIGERDVVYM QEENLAAGTL ALSSSGAAAQ RTVVRFVKLP LVERIPPYTT WIFLDKNQRM ADDQSVVGRR RIYYDPVGNE ALICSDSDEE
201: IPEPEEEKHF FTEGEDQLIW RATQEHGLNR EVINVLCQFI DATPSEIEER SEVLFEKNEK HSASSDKIES QLSLDKTMDA VLDSFDNLFC RRCLVFDCRL
301: HGCSQNLVFP CEKQPYSFEP AENKKPCGHQ CYLRFPQWRE GFQEMHDDGL GGCATYTMES GTASHKVDVN IMSESEDSNR EKGNIRSMTL FGTSGSKIIS
401: SVSAEESTTP PSADTSETEN VPSDLPPSSL RKHKISKHGP RYRERSPGKR QKVFTSDISF ASNILNKLSI PEIRDTRPES RESGGDKLRI LDESTKKTSS
501: KDIYGENPTT TTENVGRESN KVSSTNNLSE HTLSCWSALE RDLYLKGIEI FGKNSCLIAR NLLSGLKTCM EVANYMYNNG AAMAKRPLLN KSISGDFAET
601: EQDYMEQDMV ARTRIYRRRG RNRKLKYTWK SAGHPTVRKR IGDGKQWYTQ YNPCVCQQMC GKDCPCVENG TCCEKYCGCS KSCKNKFRGC HCAKSQCRSR
701: QCPCFAANRE CDPDVCRNCW VSCGDGSLGE PPARGDGYQC GNMKLLLKQQ QRILLGRSDV AGWGAFIKNP VNKNDYLGEY TGELISHKEA DKRGKIYDRA
801: NSSFLFDLND QYVLDAYRKG DKLKFANHSS NPNCYAKVML VAGDHRVGIY AKEHIEASDE LFYDYRYGPD QAPAWARRPE GSKKDEASVS HHRAHKVAR
Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)
001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
Arabidopsis Description
CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.