CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87993
EER89265
EER99683
EES13318
KXG40039
OQU79846
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	KXG40039	AT1G02580.1	15456723
AT2G35670.1	KXG40039	AT1G02580.1	16924116
AT2G35670.1	EER89265	AT2G23380.1	15456723
AT2G35670.1	EER89265	AT2G23380.1	16924116
AT2G35670.1	KXG40039	AT4G02020.1	15456723
AT2G35670.1	KXG40039	AT4G02020.1	16924116
AT4G16845.1	EER89265	AT2G23380.1	15456723
AT4G16845.1	KXG40039	AT4G02020.1	15456723
AT5G51230.1	EER87993	AT1G30530.1	23778966
AT5G51230.1	EER99683	AT1G30530.1	23778966
AT5G51230.1	EER89265	AT2G23380.1	15456723
AT5G51230.1	EES13318	AT3G20740.1	23778966
AT5G51230.1	OQU79846	AT3G20740.1	23778966
AT5G51230.1	KXG40039	AT4G02020.1	15456723
AT5G51230.1	KXG40039	AT4G02020.1	23778966
AT5G51230.1	OQU91278	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020036_P002	Maize	nucleus	94.26	86.28
KXG37542	Sorghum	nucleus	77.35	80.7
Os09t0306800-01	Rice	cytosol, nucleus	75.76	78.38
VIT_00s1675g00010.t01	Wine grape	cytosol	15.15	76.61
HORVU5Hr1G054730.1	Barley	nucleus	77.35	76.14
TraesCS5D01G184200.2	Wheat	nucleus	77.35	76.02
TraesCS5A01G179600.1	Wheat	nucleus	77.35	76.02
TraesCS5B01G177400.2	Wheat	nucleus	77.67	74.12
TraesCS2D01G000600.1	Wheat	cytosol	68.58	71.31
TraesCS2A01G000100.1	Wheat	nucleus	68.58	71.19
TraesCS2B01G023900.1	Wheat	cytosol	67.94	71.0
HORVU2Hr1G000010.32	Barley	nucleus	68.58	70.96
TraesCSU01G075500.1	Wheat	nucleus	35.57	69.91
TraesCS3B01G073800.1	Wheat	nucleus	27.59	67.58
KXG25810	Sorghum	nucleus	52.31	54.13
VIT_02s0234g00050.t01	Wine grape	nucleus	31.26	51.99
GSMUA_Achr4P29640_001	Banana	nucleus	54.7	51.81
VIT_16s0013g00860.t01	Wine grape	nucleus	52.79	50.0
KRH28171	Soybean	nucleus	33.81	49.88
KRH77315	Soybean	nucleus	33.81	49.53
GSMUA_Achr2P11170_001	Banana	nucleus	53.75	48.84
Solyc03g093640.2.1	Tomato	nucleus	49.44	48.59
CDY43476	Canola	nucleus	11.48	48.32
AT5G51230.1	Thale cress	nucleus	48.48	48.18
CDX91573	Canola	nucleus	48.17	47.94
Bra022541.1-P	Field mustard	nucleus	48.01	47.63
CDY16330	Canola	nucleus	48.01	47.63
Bra015200.1-P	Field mustard	nucleus, plastid	47.85	47.47
CDY00460	Canola	nucleus, plastid	47.85	47.47
CDX99960	Canola	nucleus	47.69	47.31
KRH33365	Soybean	nucleus	43.7	45.07
KRG90126	Soybean	nucleus	42.9	44.24
CDY00458	Canola	cytosol	23.76	43.31
Bra015201.1-P	Field mustard	cytosol	23.6	43.02
CDY71414	Canola	nucleus	25.36	39.55
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	14.04	37.93
CDX76587	Canola	nucleus	25.52	37.83
AT4G16845.1	Thale cress	nucleus	26.48	37.73
TraesCS4D01G183300.1	Wheat	nucleus	7.66	37.5
Bra021078.1-P	Field mustard	nucleus	25.36	37.41
TraesCS5D01G388900.1	Wheat	nucleus	7.18	35.16
CDX84180	Canola	cytosol	9.57	27.4
Bra005316.1-P	Field mustard	nucleus	10.21	27.0
Bra040097.1-P	Field mustard	nucleus	17.86	24.09
CDY42943	Canola	nucleus	17.86	24.09
CDY35632	Canola	cytosol	16.75	23.23
CDY31712	Canola	nucleus	12.12	21.78
KRH34601	Soybean	nucleus	26.95	21.56
CDY33160	Canola	nucleus	15.79	21.52
CDX75032	Canola	mitochondrion, nucleus	11.96	19.63
Bra005262.1-P	Field mustard	mitochondrion	11.96	19.63
Bra029179.1-P	Field mustard	nucleus	26.79	19.44
CDY38857	Canola	nucleus	22.97	19.35
CDX84179	Canola	cytosol	12.28	18.87
AT4G16810.1	Thale cress	nucleus	8.45	17.67
AT2G35670.1	Thale cress	nucleus	17.07	14.17

Protein Annotations

EnsemblPlants:OQU89244	EnsemblPlantsGene:SORBI_3002G164300	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
ProteinID:OQU89244	ProteinID:OQU89244.1	SEG:seg	UniParc:UPI0001C80DF5	UniProt:A0A1W0W4A9	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:50988018..51023194

Molecular Weight (calculated)

71263.3 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.469

Length

627 amino acids

Sequence
(BLAST)

001: MPGLPLPQPI NQNIGREYAY PGSTGQAFHQ QLRTALSPDE KLAAERDLAL YCKPVELYNI IQRRALKNPL FIQRCLLYNI HARRKKRIQI TISLSRSTNT
101: ELQAHYIFPL YVLLARPTSN LSLEGHSPIY RFSRVHLLTS FSELGNKDNS EATFIIPDVK SLSTSHPCNL DIIFISCGQV GQSNGEDNCS GNHVEGSSLQ
201: MFEGKCSWGK IPTNLLASSL ESCVNLSLGH IVELASKVTM RPSFLEPKLL EQDSCLTFCS HKVDAAGSYQ LQLCMSAQEA GARDMSLSPY SSYSYDDVPP
301: SSLSDIIRLR SGNVLFNYKY YNNTMQETEV TEDFSCPFCY VRCGSFKGLG CHLNSSHDLF HYEFWISESY QVVNVSLKAD AWRTELIAEG VDPRHQTFSY
401: RSRFKKRRRS KTTTEKIRHV HSHIMESGSP EDAQAGSEDN CVQGENGTSV ANASIDPAQS LHGSNLSPPT VLQFGKTRKL SERADPRNRQ LLQKRQFFHS
501: HRAQPMALEQ VFSDRDSEDE VDDDIADFED RRMLDDFVDV TKDEKLIMHM WNSFVRKQRV LADGHIPWAC EAFSQLHGRQ LVQNPAQLWG WRFFMIKLWN
601: HNILDARTMN TCNTVLQSFQ EESTGLK

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.