CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89569
CDX89960
CDY07102
CDY15252
CDY17381
CDY22021
CDY32472
CDY37467
CDY38942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	CDX89960	AT1G02580.1	15456723
AT2G35670.1	CDY15252	AT1G02580.1	15456723
AT2G35670.1	CDY32472	AT1G02580.1	15456723
AT2G35670.1	CDY37467	AT1G02580.1	15456723
AT2G35670.1	CDX89960	AT1G02580.1	16924116
AT2G35670.1	CDY15252	AT1G02580.1	16924116
AT2G35670.1	CDY32472	AT1G02580.1	16924116
AT2G35670.1	CDY37467	AT1G02580.1	16924116
AT2G35670.1	CDX89569	AT2G23380.1	15456723
AT2G35670.1	CDY38942	AT2G23380.1	15456723
AT2G35670.1	CDX89569	AT2G23380.1	16924116
AT2G35670.1	CDY38942	AT2G23380.1	16924116
AT2G35670.1	CDY07102	AT4G02020.1	15456723
AT2G35670.1	CDY17381	AT4G02020.1	15456723
AT2G35670.1	CDY22021	AT4G02020.1	15456723
AT2G35670.1	CDY07102	AT4G02020.1	16924116
AT2G35670.1	CDY17381	AT4G02020.1	16924116
AT2G35670.1	CDY22021	AT4G02020.1	16924116

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005316.1-P	Field mustard	nucleus	65.04	95.78
CDX84179	Canola	cytosol	84.81	72.55
CDX75032	Canola	mitochondrion, nucleus	68.77	62.83
CDY33160	Canola	nucleus	70.2	53.26
CDX84180	Canola	cytosol	26.93	42.92
GSMUA_Achr2P11140_001	Banana	cytosol	10.89	34.23
TraesCSU01G224600.1	Wheat	nucleus	10.89	30.65
TraesCSU01G194400.1	Wheat	nucleus	10.89	30.65
CDY71414	Canola	nucleus	28.37	24.63
CDX76587	Canola	nucleus	29.23	24.11
CDY42943	Canola	nucleus	30.95	23.23
CDY35632	Canola	cytosol	29.8	23.01
CDY43476	Canola	nucleus	8.6	20.13
KRH77315	Soybean	nucleus	23.21	18.93
KRH28171	Soybean	nucleus	22.64	18.59
CDY00458	Canola	cytosol	15.76	15.99
AT2G35670.1	Thale cress	nucleus	28.65	13.24
KXG37542	Sorghum	nucleus	21.78	12.65
Os09t0306800-01	Rice	cytosol, nucleus	21.78	12.54
TraesCS2B01G023900.1	Wheat	cytosol	21.2	12.33
TraesCS2D01G000600.1	Wheat	cytosol	21.2	12.27
TraesCS2A01G000100.1	Wheat	nucleus	21.2	12.25
OQU89244	Sorghum	nucleus	21.78	12.12
HORVU2Hr1G000010.32	Barley	nucleus	20.92	12.05
CDX99960	Canola	nucleus	21.78	12.03
HORVU5Hr1G054730.1	Barley	nucleus	21.78	11.93
TraesCS5D01G184200.2	Wheat	nucleus	21.78	11.91
TraesCS5A01G179600.1	Wheat	nucleus	21.78	11.91
CDY00460	Canola	nucleus, plastid	21.49	11.87
TraesCS4D01G183300.1	Wheat	nucleus	4.3	11.72
Zm00001d034036_P003	Maize	golgi	20.34	11.66
TraesCS5B01G177400.2	Wheat	nucleus	21.78	11.57
CDY16330	Canola	nucleus	20.92	11.55
CDX91573	Canola	nucleus	20.63	11.43
Os04t0162100-01	Rice	nucleus	20.34	11.38
Zm00001d020036_P002	Maize	nucleus	22.06	11.24
TraesCS5D01G388900.1	Wheat	nucleus	4.01	10.94
TraesCS2A01G002500.1	Wheat	nucleus	20.06	10.8
TraesCS2B01G020400.3	Wheat	nucleus	19.77	10.75
HORVU2Hr1G000390.20	Barley	nucleus	20.34	10.74
KXG25810	Sorghum	nucleus	18.62	10.73
CDY38857	Canola	nucleus	12.03	5.65
TraesCS3B01G073800.1	Wheat	nucleus	3.44	4.69

Protein Annotations

EnsemblPlants:CDY31712	EnsemblPlantsGene:GSBRNA2T00050335001	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	PFAM:PF09733
ProteinID:CDY31712	ProteinID:CDY31712.1	SEG:seg	UniParc:UPI0004EF2620	UniProt:A0A078H2G9	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

BnaA05g08350DBnaA05g08350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2G9]

Coordinates

chrLK032277:+:446983..449656

Molecular Weight (calculated)

40465.9 Da

IEP (calculated)

9.103

GRAVY (calculated)

-0.897

Length

349 amino acids

Sequence
(BLAST)

001: MAGVRPLTEE EKELISLYGK PITVYDILQA FSQDKGVKHH LMSSHALFDF NFRLSENGHP NFDVSVKPDA FTNGVLTYDL EEHNRVNTYL YRSKSRMRGQ
101: RGVPKGRKCC KIFEKYSEDV PRDKANEISH VNGDNIPSSL ARTRLSGQTS DIQTKTQPEI GRSSKAKEPR AIGRKRLNPQ RVGAERTDIR SRQFYHSQTL
201: QPMTLEEVLS DADSDNEDDQ EFKDFQERMK IDRLVDASDE EKRFMWLWNT FIRKQRVYAD KHVPWACEEF VKLHAKELIT PKLLWQWRMF AVDTLCLKYG
301: LICAKTMDKC STRKSARTQK KKKQEAASSS KANANGNEPQ PMELDEEQH

Best Arabidopsis Sequence Match ( AT2G35670.1 )
(BLAST)

001: MARKSIRGKE VVMVSDDDDD DDDDVDDDKN IIKCVKPLTV YKNLETPTDS DDNDDDDDDD VDVDENIIKY IKPVAVYKKL ETRSKNNPYF LRRSLKYIIQ
101: AKKKKKSNSG GKIRFNYRDV SNKMTLKAEV VENFSCPFCL IPCGGHEGLQ LHLKSSHDAF KFEFYRAEKD HGPEVDVSVK SDTIKFGVLK DDVGNPQLSP
201: LTFCSKNRNQ RRQRDDSNNV KKLNVLLMEL DLDDLPRGTE NDSTHVNDDN VSSPPRAHSS EKISDILTTT QLAIAESSEP KVPHVNDGNV SSPPRAHSSA
301: EKNESTHVND DDDVSSPPRA HSLEKNESTH VNEDNISSPP KAHSSKKNES THMNDEDVSF PPRTRSSKET SDILTTTQPA IVEPSEPKVR RVSRRKQLYA
401: KRYKARETQP AIAESSEPKV LHVNDENVSS PPEAHSLEKA SDILTTTQPA IAESSEPKVP HVNDENVSST PRAHSSKKNK STRKNVDNVP SPPKTRSSKK
501: TSDILTTTQP TIAESSEPKV RHVNDDNVSS TPRAHSSKKN KSTRKNDDNI PSPPKTRSSK KTSNILATTQ PAKAEPSEPK VTRVSRRKEL HAERCEAKRL
601: ERLKGRQFYH SQTMQPITFE QVMSNEDSEN ETDDYALDIS ERLRLERLVG VSKEEKRYMY LWNIFVRKQR VIADGHVPWA CEEFAKLHKE EMKNSSSFDW
701: WWRMFRIKLW NNGLICAKTF HKCTTILLSN SDEAGQFTSG SAANANNQQS MEVDE

Arabidopsis Description

FIS2Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 [Source:UniProtKB/Swiss-Prot;Acc:P0DKJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.