Factsheet for HORVU5Hr1G054730.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G110110.2
HORVU4Hr1G053740.8
HORVU7Hr1G026840.1
HORVU7Hr1G026910.29
HORVU7Hr1G031800.2
HORVU7Hr1G073410.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	HORVU4Hr1G053740.8	AT1G02580.1	15456723
AT2G35670.1	HORVU4Hr1G053740.8	AT1G02580.1	16924116
AT2G35670.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT2G35670.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT2G35670.1	HORVU7Hr1G026840.1	AT2G23380.1	16924116
AT2G35670.1	HORVU7Hr1G026910.29	AT2G23380.1	16924116
AT2G35670.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT2G35670.1	HORVU4Hr1G053740.8	AT4G02020.1	16924116
AT4G16845.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT4G16845.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT4G16845.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT5G51230.1	HORVU3Hr1G110110.2	AT1G30530.1	23778966
AT5G51230.1	HORVU7Hr1G031800.2	AT1G30530.1	23778966
AT5G51230.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT5G51230.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT5G51230.1	HORVU7Hr1G073410.1	AT3G20740.1	23778966
AT5G51230.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT5G51230.1	HORVU4Hr1G053740.8	AT4G02020.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G179600.1	Wheat	nucleus	96.55	96.39
TraesCS5D01G184200.2	Wheat	nucleus	96.39	96.24
TraesCS5B01G177400.2	Wheat	nucleus	96.39	93.46
TraesCSU01G075500.1	Wheat	nucleus	44.27	88.4
TraesCS3B01G073800.1	Wheat	nucleus	35.16	87.5
Os09t0306800-01	Rice	cytosol, nucleus	77.71	81.68
KXG37542	Sorghum	nucleus	75.2	79.7
HORVU2Hr1G000010.32	Barley	nucleus	74.73	78.55
OQU89244	Sorghum	nucleus	76.14	77.35
VIT_00s1675g00010.t01	Wine grape	cytosol	14.91	76.61
Zm00001d034036_P003	Maize	golgi	70.17	73.4
Zm00001d020036_P002	Maize	nucleus	75.67	70.36
HORVU2Hr1G000390.20	Barley	nucleus	57.61	55.52
GSMUA_Achr4P29640_001	Banana	nucleus	55.1	53.02
VIT_02s0234g00050.t01	Wine grape	nucleus	30.77	51.99
VIT_16s0013g00860.t01	Wine grape	nucleus	52.75	50.76
KRH28171	Soybean	nucleus	33.44	50.12
GSMUA_Achr2P11170_001	Banana	nucleus	54.16	50.0
Solyc03g093640.2.1	Tomato	nucleus	49.92	49.84
KRH77315	Soybean	nucleus	33.44	49.77
AT5G51230.1	Thale cress	nucleus	48.98	49.45
Bra022541.1-P	Field mustard	nucleus	48.67	49.05
CDY16330	Canola	nucleus	48.67	49.05
CDX91573	Canola	nucleus	48.35	48.89
CDY00460	Canola	nucleus, plastid	48.04	48.42
Bra015200.1-P	Field mustard	nucleus, plastid	48.04	48.42
CDY43476	Canola	nucleus	11.3	48.32
CDX99960	Canola	nucleus	47.88	48.26
KRG90126	Soybean	nucleus	45.21	47.37
KRH33365	Soybean	nucleus	44.74	46.88
TraesCS4D01G183300.1	Wheat	nucleus	8.63	42.97
CDY00458	Canola	cytosol	23.08	42.73
Bra015201.1-P	Field mustard	cytosol	22.92	42.44
TraesCS5D01G388900.1	Wheat	nucleus	8.01	39.84
CDY71414	Canola	nucleus	24.96	39.55
AT4G16845.1	Thale cress	nucleus	26.53	38.41
CDX76587	Canola	nucleus	24.8	37.35
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	13.5	37.07
Bra021078.1-P	Field mustard	nucleus	24.65	36.94
CDX84180	Canola	cytosol	9.42	27.4
CDY42943	Canola	nucleus	19.31	26.45
Bra040097.1-P	Field mustard	nucleus	19.31	26.45
Bra005316.1-P	Field mustard	nucleus	9.73	26.16
CDY35632	Canola	cytosol	18.37	25.89
CDY33160	Canola	nucleus	16.01	22.17
CDY31712	Canola	nucleus	11.93	21.78
KRH34601	Soybean	nucleus	26.37	21.43
CDY38857	Canola	nucleus	23.55	20.16
Bra029179.1-P	Field mustard	nucleus	27.16	20.02
CDX75032	Canola	mitochondrion, nucleus	11.93	19.9
Bra005262.1-P	Field mustard	mitochondrion	11.93	19.9
CDX84179	Canola	cytosol	12.24	19.12
AT4G16810.1	Thale cress	nucleus	8.48	18.0
AT2G35670.1	Thale cress	nucleus	16.01	13.51

Protein Annotations

EnsemblPlants:HORVU5Hr1G054730.1	EnsemblPlantsGene:HORVU5Hr1G054730	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
SEG:seg	UniParc:UPI0002964043	UniProt:M0Y192	MapMan:12.3.3.1.1.3	MapMan:15.5.15	:

Description

No Description!

Coordinates

chrchr5H:+:429398115..429410779

Molecular Weight (calculated)

71954.2 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.417

Length

637 amino acids

Sequence
(BLAST)

001: MPGLPLPARD AADTGCEFSY PQSADQMRQQ QLRARLSPDE QLAAEESFAL YCKPVELYNI IQRRAIRNPA FLQRCLHYKI HASRKKRIQI TVSLSRGTNT
101: ELPEQNVFPL YVLLATPTTN ISLEGHSPIY RFSRACLLTS FSECGSKGRT KATFTIPDIK NLSTSRACNL NIILISCVSE GQVEENVGEH NCSVNHVEGS
201: ALQKLEGKCF WGKIPIDLLG SSLENCVTLN LGHTVELASA VSMSPSFLEP KFMEQDSCLT FCSHKVDATG SYQLQVGISA QEAGARDMSE SPYSSYSYSG
301: VPPSSLPHII RLRAGNVLFN FKYYNNTMQK TEVTEDFACP FCLVKCGSYK GLGCHLNSSH DLFHFEFWIS EECQAVNVSL KTDVWRTELV AEGVDPRHQT
401: FSYSSRFKKR RRLGMLGTTA EKISHVHPHI MDSDSPEDAQ AVSEGDFVQR EEDDISAPRA SVDPAQSLHD SNLSPPTVLQ FGKTRKLSAE RADPRNRQLL
501: QKRQFFHSHR AQPMALEQVF SDRDSEDEVD DDIADFEDRR MLDDFVDVTN DEKLIMHMWN SFVRKQRVLA DGHIPWACEA FSRLHGKHLV QNPPLLWSWR
601: FLMIKLWNHS LLDARAMNVC GTILQGYQNE SSDPKNI

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.