CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88587
KRH02903
KRH10620
KRH18985
KRH21732
KRH22237
KRH27099
KRH28444
KRH31935
KRH42070
KRH42369
KRH49847
KRH49848
KRH49849
KRH55397
KRH58491
KRH71526
KRH77020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	KRG88587	AT1G30530.1	23778966
AT5G51230.1	KRH02903	AT1G30530.1	23778966
AT5G51230.1	KRH10620	AT1G30530.1	23778966
AT5G51230.1	KRH18985	AT1G30530.1	23778966
AT5G51230.1	KRH21732	AT1G30530.1	23778966
AT5G51230.1	KRH42070	AT1G30530.1	23778966
AT5G51230.1	KRH49847	AT1G30530.1	23778966
AT5G51230.1	KRH49848	AT1G30530.1	23778966
AT5G51230.1	KRH49849	AT1G30530.1	23778966
AT5G51230.1	KRH55397	AT1G30530.1	23778966
AT5G51230.1	KRH28444	AT2G23380.1	15456723
AT5G51230.1	KRH77020	AT2G23380.1	15456723
AT5G51230.1	KRH22237	AT3G20740.1	23778966
AT5G51230.1	KRH27099	AT3G20740.1	23778966
AT5G51230.1	KRH31935	AT3G20740.1	23778966
AT5G51230.1	KRH71526	AT3G20740.1	23778966
AT5G51230.1	KRH42369	AT5G58230.1	23778966
AT5G51230.1	KRH58491	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33365	Soybean	nucleus	26.91	34.7
KRG90126	Soybean	nucleus	26.91	34.7
VIT_00s1675g00010.t01	Wine grape	cytosol	5.1	32.26
GSMUA_Achr2P11140_001	Banana	cytosol	4.46	31.53
TraesCSU01G194400.1	Wheat	nucleus	4.97	31.45
TraesCSU01G224600.1	Wheat	nucleus	4.97	31.45
KRH28171	Soybean	nucleus	16.33	30.12
Bra015200.1-P	Field mustard	nucleus, plastid	24.23	30.06
CDY00460	Canola	nucleus, plastid	24.23	30.06
CDX99960	Canola	nucleus	24.11	29.91
KRH77315	Soybean	nucleus	16.2	29.67
AT5G51230.1	Thale cress	nucleus	23.85	29.64
Solyc03g093640.2.1	Tomato	nucleus	23.98	29.47
CDY16330	Canola	nucleus	23.6	29.27
Bra022541.1-P	Field mustard	nucleus	23.6	29.27
CDX91573	Canola	nucleus	23.47	29.21
KXG37542	Sorghum	nucleus	21.81	28.45
Os09t0306800-01	Rice	cytosol, nucleus	21.81	28.22
TraesCS2A01G000100.1	Wheat	nucleus	21.17	27.48
TraesCS2D01G000600.1	Wheat	cytosol	21.05	27.36
TraesCS2B01G023900.1	Wheat	cytosol	20.66	27.0
OQU89244	Sorghum	nucleus	21.56	26.95
HORVU2Hr1G000010.32	Barley	nucleus	20.79	26.9
VIT_02s0234g00050.t01	Wine grape	nucleus	12.88	26.79
HORVU5Hr1G054730.1	Barley	nucleus	21.43	26.37
TraesCS5D01G184200.2	Wheat	nucleus	21.3	26.18
TraesCS5A01G179600.1	Wheat	nucleus	21.3	26.18
TraesCS4D01G183300.1	Wheat	nucleus	4.21	25.78
TraesCS5B01G177400.2	Wheat	nucleus	21.56	25.72
Zm00001d034036_P003	Maize	golgi	19.77	25.45
Os04t0162100-01	Rice	nucleus	19.77	24.84
KXG25810	Sorghum	nucleus	18.75	24.26
Zm00001d020036_P002	Maize	nucleus	21.17	24.23
TraesCS5D01G388900.1	Wheat	nucleus	3.95	24.22
TraesCS2B01G020400.3	Wheat	nucleus	18.62	22.74
HORVU2Hr1G000390.20	Barley	nucleus	19.13	22.69
TraesCS2A01G002500.1	Wheat	nucleus	18.62	22.53
TraesCS3B01G073800.1	Wheat	nucleus	6.89	21.09
CDY38857	Canola	nucleus	18.49	19.49
Bra029179.1-P	Field mustard	nucleus	21.17	19.21

Protein Annotations

EntrezGene:100814462	MapMan:12.3.3.1.1.3	MapMan:15.5.15	EMBL:ACUP02006610	EnsemblPlantsGene:GLYMA_10G193800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031490	InterPro:IPR013087	UniProt:K7LKC7	EnsemblPlants:KRH34601
ProteinID:KRH34601	ProteinID:KRH34601.1	PFAM:PF09733	ScanProsite:PS00028	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0
InterPro:Polycomb_protein_VEFS-Box	UniParc:UPI0002953E6A	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:42580656..42599131

Molecular Weight (calculated)

88767.7 Da

IEP (calculated)

6.991

GRAVY (calculated)

-0.578

Length

784 amino acids

Sequence
(BLAST)

001: MPDIPGTSSA RMAASETNSR RTGQRNNRVV WENLSEEEKL AAIESLTVYC RPIELYNIIK SRTKKKPLYL RRCMDYHIKA KRKKRLVLTA SLSWKDDDNR
101: ALFPLCVCLG RLDPNTEARS AQRYHVGKIS SFKGLSGVDG KGNTQLEVNF MLPEFDKLAG EVSTAKYWFL VFASAGNPIS LSRANSSPWP VEVSSNESWG
201: GERCLYGKVS LNFHQDNGNV FPYFLLRKPG KIKIEMNLHP CILTYHLQYC IQRKSKIISI QDSRNSKAKL EQFEVSFCLE EFGAREKSSS QTNTSTEVSW
301: IPPSSSQILW SKEGNVVFCY RYYNNKLHRT EVTENFSCTI CLDRCASYKG LKCHLQSSHD GYFNFEFSNS EDFPFVFLSV KTVISTIKDV GAGINPRLQT
401: FLYCAKRLKH REPTRGRTNE TDRLLFNAGV PSPDESKAII LHPGPRCVPS IFDHDNGTHA MLQYDPEGVS DEILLPGPDC VLSVSDHDDV THAMILDDHE
501: GVSNATLHHE GVSNRDDGTR AMLLDDHEGS NATLHPGPDC VPSDDDGTHA MLEDDSEGVT NAILLPRPDY VPSLSDHHGG TRAVPQVDHE GVSNVIVLNP
601: SQDCVASTSK HDHGAPKVRK ARKKDKLPIE QYDPRIVARF EKRQFYHSHK YQPMALEEAL LDEDSEDEMN EGAQEIEDRR RLAILDAPDH VKEFLSLWNA
701: FIKKHRGRVL ADGHINWACE AFTKYHSAEF AQSNSLAWNW RMFMIKLINQ GLLKTSTFVA CNNILEQCRK QNQDPQRQNQ DPQS

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.