Factsheet for Os04t0162100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0307800-01
Os03t0640100-01
Os06t0192100-00
Os06t0275500-01
Os07t0148200-01
Os08t0137100-01
Os08t0137250-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	Os03t0307800-01	AT1G02580.1	15456723
AT2G35670.1	Os03t0307800-01	AT1G02580.1	16924116
AT2G35670.1	Os06t0275500-01	AT2G23380.1	15456723
AT2G35670.1	Os06t0275500-01	AT2G23380.1	16924116
AT2G35670.1	Os03t0307800-01	AT4G02020.1	15456723
AT2G35670.1	Os03t0307800-01	AT4G02020.1	16924116
AT4G16845.1	Os06t0275500-01	AT2G23380.1	15456723
AT4G16845.1	Os03t0307800-01	AT4G02020.1	15456723
AT5G51230.1	Os06t0192100-00	AT1G30530.1	23778966
AT5G51230.1	Os07t0148200-01	AT1G30530.1	23778966
AT5G51230.1	Os06t0275500-01	AT2G23380.1	15456723
AT5G51230.1	Os08t0137100-01	AT3G20740.1	23778966
AT5G51230.1	Os08t0137250-01	AT3G20740.1	23778966
AT5G51230.1	Os03t0307800-01	AT4G02020.1	15456723
AT5G51230.1	Os03t0307800-01	AT4G02020.1	23778966
AT5G51230.1	Os03t0640100-01	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1675g00010.t01	Wine grape	cytosol	13.62	68.55
Os09t0306800-01	Rice	cytosol, nucleus	60.42	62.21
KXG25810	Sorghum	nucleus	48.88	50.33
HORVU2Hr1G000390.20	Barley	nucleus	53.04	50.08
TraesCS2A01G002500.1	Wheat	nucleus	50.96	49.07
TraesCS2B01G020400.3	Wheat	nucleus	50.16	48.75
CDY43476	Canola	nucleus	10.9	45.64
KRH77315	Soybean	nucleus	31.09	45.33
KRH28171	Soybean	nucleus	30.77	45.18
VIT_02s0234g00050.t01	Wine grape	nucleus	26.44	43.77
GSMUA_Achr4P29640_001	Banana	nucleus	45.67	43.05
VIT_16s0013g00860.t01	Wine grape	nucleus	45.51	42.9
Solyc03g093640.2.1	Tomato	nucleus	43.59	42.63
CDX91573	Canola	nucleus	42.79	42.38
CDY16330	Canola	nucleus	42.47	41.93
Bra022541.1-P	Field mustard	nucleus	42.47	41.93
AT5G51230.1	Thale cress	nucleus	41.67	41.2
Bra015200.1-P	Field mustard	nucleus, plastid	41.35	40.82
CDY00460	Canola	nucleus, plastid	41.35	40.82
CDX99960	Canola	nucleus	41.19	40.66
KRH33365	Soybean	nucleus	38.14	39.14
CDY00458	Canola	cytosol	21.31	38.66
GSMUA_Achr2P11170_001	Banana	nucleus	42.63	38.55
Bra015201.1-P	Field mustard	cytosol	21.15	38.37
KRG90126	Soybean	nucleus	37.18	38.16
CDY71414	Canola	nucleus	23.56	36.57
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	13.46	36.21
CDX76587	Canola	nucleus	23.4	34.52
Bra021078.1-P	Field mustard	nucleus	23.24	34.12
AT4G16845.1	Thale cress	nucleus	22.76	32.27
Bra005316.1-P	Field mustard	nucleus	9.94	26.16
CDY42943	Canola	nucleus	17.31	23.23
Bra040097.1-P	Field mustard	nucleus	17.31	23.23
CDY35632	Canola	cytosol	16.35	22.57
CDX84180	Canola	cytosol	7.85	22.37
CDY33160	Canola	nucleus	15.38	20.87
CDY31712	Canola	nucleus	11.38	20.34
Bra005262.1-P	Field mustard	mitochondrion	12.34	20.16
CDX75032	Canola	mitochondrion, nucleus	12.18	19.9
KRH34601	Soybean	nucleus	24.84	19.77
CDY38857	Canola	nucleus	21.47	18.01
CDX84179	Canola	cytosol	11.7	17.89
Bra029179.1-P	Field mustard	nucleus	23.72	17.13
AT4G16810.1	Thale cress	nucleus	7.85	16.33
AT2G35670.1	Thale cress	nucleus	15.87	13.11

Protein Annotations

MapMan:12.3.3.1.1.3	MapMan:15.5.15	EntrezGene:4335036	ProteinID:BAF14039.1	ProteinID:BAS87849.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0030154	GO:GO:0031490	GO:GO:0046872	EnsemblPlantsGene:Os04g0162100	EnsemblPlants:Os04t0162100-01	PFAM:PF09733
PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	InterPro:Polycomb_protein_VEFS-Box	UniProt:Q0JF48	UniParc:UPI0000DD8F3C	RefSeq:XP_015636445.1
RefSeq:XP_015636446.1	RefSeq:XP_015636447.1	RefSeq:XP_015636448.1	RefSeq:XP_015636449.1	RefSeq:XP_015636450.1	SEG:seg

Description

EMBRYONIC FLOWER 2AZinc finger, C2H2-like domain containing protein. (Os04t0162100-01);Similar to EMF protein. (Os04t0162100-02)

Coordinates

chr4:+:4274885..4290695

Molecular Weight (calculated)

71550.7 Da

IEP (calculated)

6.237

GRAVY (calculated)

-0.502

Length

624 amino acids

Sequence
(BLAST)

001: MPGLPLTDHD AVNTGCEFDC QRSSDQMCCE HSVAQFSSDQ QLNPEENLAL YCKPLELYNF IRHRAIENPP YLQRCLLYKI RAKQKKRIQI TISLPGSNNK
101: ELQAQNIFPL YVLFARPTSN VPIEGHSPIY RFSQARLLTS FNDSGNNDRA EATFVIPDLE TLIATQAYGL TFILVSRGTK KNKGRTGQNL CENDCSEKHV
201: DYSSLRKLAG KCFWGKIPIT LLNSSLETCA DLILGHIVES PISICMSPGY LEPTFLEHDN CLSFCSRKAD AMVPYQLQVK VSAAEAGAKD ILKSPYNSFS
301: YSDVPPSLLL RIVRLRVGNV LFNYKNTQMS EVTEDFTCPF CLVRCGNFKG LECHMTSSHD LFHYEFWISE DYQAVNVTLK KDNMRTEFVA AEVDNSHRIF
401: YYRSRFKKSR TEILPVARAD AHIMESGSPE ETQAESEDDV QEENENALID DSKKLHGSNH SQSEFLAFGK SRKLSANRAD PRNRLLLQKR QFIHSHKAQP
501: MTFEEVLSDN DSEDEVDDDI ADLEDRRMLD DFVDVTKDEK RIMHMWNSFI RKQSILADSH VPWACEAFSR HHGEELLENS ALLWGWRMFM IKLWNHSLLS
601: ARTMDTCNRI LDDIKNERSD PKKQ

Best Arabidopsis Sequence Match ( AT5G51230.3 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SRRRQKSQVR
401: SSRQGPHLGL GCEVLDKTDD AHSVRSEKSR IPPGKHYERI GGAESGQRVP PGTSPADVQS CGDPDYVQSI AGSTMLQFAK TRKISIERSD LRNRSLLQKR
501: QFFHSHRAQP MALEQVLSDR DSEDEVDDDV ADFEDRRMLD DFVDVTKDEK QMMHMWNSFV RKQRVLADGH IPWACEAFSR LHGPIMVRTP HLIWCWRVFM
601: VKLWNHGLLD ARTMNNCNTF LEQLQI

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.