CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89569
CDX89960
CDY07102
CDY15252
CDY17381
CDY22021
CDY32472
CDY37467
CDY38942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	CDX89960	AT1G02580.1	15456723
AT2G35670.1	CDY15252	AT1G02580.1	15456723
AT2G35670.1	CDY32472	AT1G02580.1	15456723
AT2G35670.1	CDY37467	AT1G02580.1	15456723
AT2G35670.1	CDX89960	AT1G02580.1	16924116
AT2G35670.1	CDY15252	AT1G02580.1	16924116
AT2G35670.1	CDY32472	AT1G02580.1	16924116
AT2G35670.1	CDY37467	AT1G02580.1	16924116
AT2G35670.1	CDX89569	AT2G23380.1	15456723
AT2G35670.1	CDY38942	AT2G23380.1	15456723
AT2G35670.1	CDX89569	AT2G23380.1	16924116
AT2G35670.1	CDY38942	AT2G23380.1	16924116
AT2G35670.1	CDY07102	AT4G02020.1	15456723
AT2G35670.1	CDY17381	AT4G02020.1	15456723
AT2G35670.1	CDY22021	AT4G02020.1	15456723
AT2G35670.1	CDY07102	AT4G02020.1	16924116
AT2G35670.1	CDY17381	AT4G02020.1	16924116
AT2G35670.1	CDY22021	AT4G02020.1	16924116

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75032	Canola	mitochondrion, nucleus	65.22	78.53
CDX84179	Canola	cytosol	63.91	72.06
CDY31712	Canola	nucleus	53.26	70.2
CDX84180	Canola	cytosol	30.43	63.93
CDY43476	Canola	nucleus	13.04	40.27
CDY71414	Canola	nucleus	28.26	32.34
CDX76587	Canola	nucleus	28.7	31.21
GSMUA_Achr2P11140_001	Banana	cytosol	7.39	30.63
CDY42943	Canola	nucleus	27.39	27.1
TraesCSU01G224600.1	Wheat	nucleus	7.17	26.61
TraesCSU01G194400.1	Wheat	nucleus	7.17	26.61
CDY35632	Canola	cytosol	26.09	26.55
KRH28171	Soybean	nucleus	22.83	24.71
KRH77315	Soybean	nucleus	22.61	24.3
TraesCS4D01G183300.1	Wheat	nucleus	6.3	22.66
TraesCS5D01G388900.1	Wheat	nucleus	6.09	21.88
CDY00458	Canola	cytosol	13.91	18.6
KXG37542	Sorghum	nucleus	22.61	17.3
Os09t0306800-01	Rice	cytosol, nucleus	22.17	16.83
TraesCS2B01G023900.1	Wheat	cytosol	21.3	16.33
Zm00001d034036_P003	Maize	golgi	21.3	16.09
HORVU5Hr1G054730.1	Barley	nucleus	22.17	16.01
HORVU2Hr1G000010.32	Barley	nucleus	21.09	16.01
TraesCS2D01G000600.1	Wheat	cytosol	20.87	15.92
TraesCS2A01G000100.1	Wheat	nucleus	20.87	15.89
TraesCS5D01G184200.2	Wheat	nucleus	21.96	15.83
TraesCS5A01G179600.1	Wheat	nucleus	21.96	15.83
OQU89244	Sorghum	nucleus	21.52	15.79
CDX99960	Canola	nucleus	21.52	15.66
CDY00460	Canola	nucleus, plastid	21.3	15.51
Os04t0162100-01	Rice	nucleus	20.87	15.38
TraesCS5B01G177400.2	Wheat	nucleus	21.96	15.37
CDY16330	Canola	nucleus	20.43	14.87
KXG25810	Sorghum	nucleus	19.35	14.69
TraesCS2A01G002500.1	Wheat	nucleus	20.65	14.66
CDX91573	Canola	nucleus	20.0	14.6
Zm00001d020036_P002	Maize	nucleus	21.74	14.6
TraesCS2B01G020400.3	Wheat	nucleus	20.22	14.49
HORVU2Hr1G000390.20	Barley	nucleus	20.65	14.37
AT2G35670.1	Thale cress	nucleus	23.26	14.17
CDY38857	Canola	nucleus	16.09	9.95
TraesCS3B01G073800.1	Wheat	nucleus	4.78	8.59

Protein Annotations

EnsemblPlants:CDY33160	EnsemblPlantsGene:GSBRNA2T00053875001	InterPro:Polycomb_protein_VEFS-Box	ncoils:Coil	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8
PFAM:PF09733	ProteinID:CDY33160	ProteinID:CDY33160.1	SEG:seg	UniParc:UPI0004EEECEB	UniProt:A0A078H3F4
MapMan:12.3.3.1.1.3	MapMan:15.5.15	:	:	:	:

Description

BnaC04g08790DBnaC04g08790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3F4]

Coordinates

chrLK032308:-:52919..55615

Molecular Weight (calculated)

52243.7 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.557

Length

460 amino acids

Sequence
(BLAST)

001: MAGVKPLTEE DKEVISLYGK PITLYGILQA FTQDKPRFLP RCLSYKIQAR KNKMANLSGI TIFNYMNCNN IILRSQVVKR NSCPFCRMKC GSLKGVKHHL
101: TSSHALFDFN FRLSENGHPM FDVSVKPDAF KNGVLNYDLE EHDRVNIYFY RSKSCMRGQR AGPKGRKCCK IFEMYSEDVP RDKANEIPHV NGDNITSSLA
201: RTRLSGHTSE IQTITQPEIG QSSRAKGPRA IGRKRLNPRR LEAERTDLLR SRQFYHSKTL QPMTLEEVLS DADSDNENDK EFKDFQERMK IDRLVDASDD
301: EKRFMGLWNT FMGEQSVYVD KHVPWACEQF VKHHAKELIT PKLSWQWRMF ALDTLCIKYG LISPKTMDKC SIILQKAQLE EEFPEEAAAA AEVEALEEAE
401: AAVAAAAEAA AKAEKAAADA AAAKASAAKG TRKSARIQKK KMQEAERRTL AMVCVRDLHF

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.