Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43476 | Canola | nucleus | 26.03 | 38.26 |
| CDY33160 | Canola | nucleus | 63.93 | 30.43 |
| CDY31712 | Canola | nucleus | 42.92 | 26.93 |
| CDX84179 | Canola | cytosol | 44.75 | 24.02 |
| CDX75032 | Canola | mitochondrion, nucleus | 38.81 | 22.25 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 11.87 | 20.31 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 11.42 | 19.53 |
| CDY71414 | Canola | nucleus | 31.96 | 17.41 |
| CDX76587 | Canola | nucleus | 31.51 | 16.31 |
| KRH28171 | Soybean | nucleus | 28.31 | 14.59 |
| KRH77315 | Soybean | nucleus | 27.85 | 14.25 |
| KXG37542 | Sorghum | nucleus | 29.22 | 10.65 |
| CDY35632 | Canola | cytosol | 21.92 | 10.62 |
| CDY42943 | Canola | nucleus | 21.92 | 10.32 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 28.31 | 10.23 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 27.4 | 10.0 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 27.4 | 9.95 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 27.4 | 9.93 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 27.4 | 9.9 |
| OQU89244 | Sorghum | nucleus | 27.4 | 9.57 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 27.4 | 9.42 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 27.4 | 9.4 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 27.4 | 9.4 |
| Zm00001d034036_P003 | Maize | golgi | 26.03 | 9.36 |
| CDY00460 | Canola | nucleus, plastid | 26.94 | 9.34 |
| CDX99960 | Canola | nucleus | 26.94 | 9.34 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 27.4 | 9.13 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 27.4 | 9.08 |
| Zm00001d020036_P002 | Maize | nucleus | 27.85 | 8.91 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 26.03 | 8.88 |
| CDY16330 | Canola | nucleus | 25.57 | 8.86 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 26.03 | 8.8 |
| CDX91573 | Canola | nucleus | 25.11 | 8.73 |
| Os04t0162100-01 | Rice | nucleus | 22.37 | 7.85 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 9.13 | 7.81 |
| KXG25810 | Sorghum | nucleus | 21.46 | 7.76 |
| CDY38857 | Canola | nucleus | 22.37 | 6.59 |
| CDY00458 | Canola | cytosol | 10.05 | 6.4 |
| GSMUA_Achr2P11140_001 | Banana | cytosol | 2.74 | 5.41 |
| TraesCSU01G194400.1 | Wheat | nucleus | 2.74 | 4.84 |
| TraesCSU01G224600.1 | Wheat | nucleus | 2.74 | 4.84 |
| AT2G35670.1 | Thale cress | nucleus | 15.07 | 4.37 |
Protein Annotations
| EnsemblPlants:CDX84180 | EnsemblPlantsGene:GSBRNA2T00141228001 | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | ProteinID:CDX84180 | ProteinID:CDX84180.1 |
| UniParc:UPI0004EEFEFD | MapMan:15.5.15 | : | : | : | : |
Description
BnaC04g09420D
Coordinates
chrLK031836:-:590889..592386
Molecular Weight (calculated)
25553.7 Da
IEP (calculated)
9.981
GRAVY (calculated)
-0.748
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVRPLTEE EKELMSLYGK PITVYDILQA FSQDKPRFFP RCLSYKIQAR KNKMESLGEI SIYNYMNCNN IVLKSQVVKQ TSCPFCPMKC GSLKGVKHNL
101: TSSHALFDFN FRLSENGHPN IDVSVKPDAF KNGVLNYDLE EHNSVNFKFY HSKSRMRGGQ RDCRKRHKRC KIFEKYSDDV PRDKANELPH VNGDNISPPW
201: QELPFRKRLA TFRQLLNQR
101: TSSHALFDFN FRLSENGHPN IDVSVKPDAF KNGVLNYDLE EHNSVNFKFY HSKSRMRGGQ RDCRKRHKRC KIFEKYSDDV PRDKANELPH VNGDNISPPW
201: QELPFRKRLA TFRQLLNQR
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.